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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gttaaataatttgcttttaccttgtttgtgctgcagAATGTAAGGGAACAGCTGGAGGAATCCCTTCCTGGAACTGGAGGGGGCCAAAATCCTAAAGATAATTATCTTGTGAAGTTTCTTTTTCTGCTACCATTTT

Basic information

species Glycine max
transcript GLYMA10G30700.1
intron # 8
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA10G30700.1 (Glycine max), 3'ss of exon 8
lower sequence: Vv14s0036g00430.t01 (Vitis vinifera), 3'ss of exon 5
------------------------------------------------------------gttaaataatttgcttttaccttgttt----gtgctgcagAATGTAAGGGAACAGCTGGAGGAATCCCTTCCTGGAACTGGAGGGGGCCAAAATCCTAAAGATAATTATCTTGTGAAGTTTCTTTTTCTGCTACCATTTT
                                                            | | |||  | || | | ||  |||||     |||| |||||||| ||||||||||| |||| ||| ||||||||||||| |||||||  ||||||||| ||||    ||| || || |||||||| ||| | |||||  
gagcttatggggaaatttattgtttcatgcagtgaatgagcatttagtcactgatttaatgctcaattctatgatgtaacactgttttctaatgcttcagAATGTCAGGGAACAGCTTGAGGGATCTCTTCCTGGAACTGAAGGGGGCAGAAATCCTAATGATACAATTCTAGTCAAATTTCTTTTCCTGATTCCATTGC


















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

gttaaataatttgcttttaccttgtttgtgctgcagAATGTAAGGGAACAGCTGGAGGAATCCCTTCCTGGAACTGGAGGGGGCCAAAATCCTAAAGATAATTATCTTGTGAAGTTTCTTTTTCTGCTACCATTTT
                                                  cttttaccttgttt  CT-rich tract
                    ttaaataatttgcttt  TA-rich tract