Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   		6  
 5'  3'   		7  
 5'  3'   		8  
 5'  3'   		9  
 5'  3'   		10  
 5'  3'   		11  
 5'  3'   		12  
 5'  3'   		13  
 5'  3'   		14  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtgagtgcagtttttcgataaatttttaattatcatgactttgaatttatatgatgtctccttgttttgcttaattagtgaagcttgtgttactgattcgtaattcttttatttttgtagTTATACTTGACAGACTTGCAAACAAGAGAGAGTGTTTTGCTTTCAACCGGGGAAAATCCTATTCTTCAATTGGCTTTGCATGACGATAGCATTTGGGTTG

Basic information

species Glycine max
transcript GLYMA10G30050.1
intron # 8
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA10G30050.1 (Glycine max), 3'ss of exon 8
lower sequence: AT3G05090.1 (Arabidopsis thaliana), 3'ss of exon 9
gtgagtgcagtttttcgataaatttttaattatcatgactttgaatttatatgatgtctccttgttttgcttaattagtgaagcttgtgttactgattcg---taattcttttatttttgt-agTTATACTTGACAGACTTGCAAACAAGAGAGAGTGTTTTGCTTTCAACCGGGGAAAATCCTATTCTTCAATTGGCTTTGCATGACGATAGCATTTGGGTTG
                             | |  | |||    || || | |    | || ||| ||| |||     ||  | | |   ||  | |||     ||  | || | |||  || ||||||||||||||||||||  |||||| |||||||||||||| |  ||   |||| |||| ||||  ||||| || ||||| ||  |||| || |||||||
----------------------------gtgagta-gacaccaaacttgttt---ctttctttggttttcttccagcgtataacctccttttttaatttcatttatctgttatgtttccgtcagTTATACTTGACAGACTTGGCAACAAGGGAGAGTGTTTTGCTGTGCACTAAGGAACATCCAATTCAACAATTAGCGTTGCAAGATAATAGTATATGGGTTG

upper sequence: GLYMA10G30050.1 (Glycine max), 3'ss of exon 8
lower sequence: Vv14s0030g01350.t01 (Vitis vinifera), 3'ss of exon 9
--------------------------------------------------------------------gtgagtgcagtttttcgataaatttttaattatcatgactttgaatttatatga-----tgtctccttgttttg--cttaattagtgaagcttgtgttactgattcgtaattct-tttatttttgtagTTATACTTGACAGACTTGCAAACAAGAGAGAGTGTTTTGCTTTCAACCGGGGAAAATCCTATTCTTCAATTGGCTTTGCATGACGATAGCATTTGGGTTG
                                                                     | | |    |  ||    | ||  |   || ||     |||   | | |||       | ||||  | || ||  |||  |  |  |  ||  |  |  |||| |  |||||| |||||  |   ||||||||||||||||||||   |||||||||||| |||||||||  ||   |||| |||||||| | ||| |||| |||||||| ||| |||| |||| ||
gtgagtacagttttctcccagaactcaaccaatgcaaatattcccctgcctctttcttatgttttgccattatttttttcctttagcatatgatgttttctcccttttttctttctctatctctctctctctctcttttctgatctttttctgcaatactcatcct-ttgatgcccaattctgtttatactctcagTTATACTTGACAGACTTGGCGACAAGAGAGAGTATTTTGCTTTGCACAAAGGAACATCCTATTTTGCAACTGGCATTGCATGATGATGGCATATGGGCTG


















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tttgcttaattagtgaagcttgtgttactgattcgtaattcttttatttttgtagTTATACTTGACAGACTTGCAAACAAGAGAGAGTGTTTTGCTTTCAACCGGGGAAAATCCTATTCTTCAATTGGCTTTGCATGACGATAGCATTTGGGTTG
                         tactgat  putative branch site (score: 2)
                                      ttcttttatttttgt  putative PPT
                              attcgtaattctttta  TA-rich tract