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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gttcattatacactcttctacaccgtagtaatatttttataaattattttgcattataagataaatatattcaacatttgaaaaacatttgtcagATTTCAAGGATGACCCCGACCTCTATGTTTTCCCCAACTTGAAGTACGTGGGGATTGAATTGTGGCAG

Basic information

species Glycine max
transcript GLYMA10G28890.2
intron # 8
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA10G28890.2 (Glycine max), 3'ss of exon 8
lower sequence: AT1G56340.1 (Arabidopsis thaliana), 3'ss of exon 6
---------------------------------------gttcattat----acactcttctacaccgtagtaatattt-ttataaattattttgcattataagataa-atatattcaacatttg----aaaaacatttgt------cagATTTCAAGGATGACCCCGACCTCTATGTTTTCCCCAACTTGAAGTACGTGGGGATTGAATTGTGGCAG
                                       |||    ||    | | |  |  |      |||| ||||| || |||  | |||       | |||||| || |  | |  | |      ||  | ||   |      |||| |||||||||||||| || |||||||| |||||||| |||||||| || ||  |||| |||||||||
gtaatttaggaatccgtatttatattcacctgaaatagagtttgagattctgatagttatggatgtaacagtagtatttattgtaagatttttgtttccctgagataatatctgataagtagtaagtctaagtatatcaatttgacacagAATTCAAGGATGACCCAGAACTCTATGTCTTCCCCAAATTGAAGTATGTTGGAGTTGAGTTGTGGCAG

upper sequence: GLYMA10G28890.2 (Glycine max), 3'ss of exon 8
lower sequence: Vv14s0060g01290.t01 (Vitis vinifera), 3'ss of exon 8
gttcattatacactcttctacaccgta-gtaatatttttataaattattttgcattataagataaatatattcaacatttgaaaaacatttgtcagATTTCAAGGATGACCCCGACCTCTATGTTTTCCCCAACTTGAAGTACGTGGGGATTGAATTGTGGCAG
||||  ||| ||  |  || |  | |   |   ||  ||||   ||  ||||  |   || ||  | | | | |  |  ||   |  ||||  |||| ||||| |||||||| ||  |||||||||||||| | |||||||| ||||| |||||| | ||||||
gttc-ctatccatgcacctgcttcttctatgccatagttattttttggtttg-gtctcaacattcagacacttataaactgttca-tattttacagAGTTCAAAGATGACCCAGAGATCTATGTTTTCCCCGATTTGAAGTATGTGGGCATTGAACTCTGGCAG
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|207761356|gb|GD733727.1|GD733727
EST:     GAACCCCAACTATAAAGGAAAATGGAAGGCACCATTGATTGATAACCCAG                         ATTTCAAGGATGACCCCGACCTCTATGTTTTCCCCAACTTGAAGTACGTGG
genomic: GAACCCCAACTATAAAGGAAAATGGAAGGCACCATTGATTGATAACCCAGgttcattata ... catttgtcagATTTCAAGGATGACCCCGACCTCTATGTTTTCCCCAACTTGAAGTACGTGG
EST: gi|10842878|gb|BF066239.1|BF066239
EST:     GAACCCCAACTATAAAGGAAAATGGAAGGCACCATTGATTGATAACCCAG                         ATTTCAAGGATGACCCCGACCTCTATGTTTTCCCCAACTTGAAGTACGTGG
genomic: GAACCCCAACTATAAAGGAAAATGGAAGGCACCATTGATTGATAACCCAGgttcattata ... catttgtcagATTTCAAGGATGACCCCGACCTCTATGTTTTCCCCAACTTGAAGTACGTGG
EST: gi|208325996|gb|GE119706.1|GE119706
EST:     AACCCCAACTATAAAGGAAAATGGAAGGCACCATTGATTGATAACCCAG                         ATTTCAAGGATGACCCCGACCTCTATGTTTTCCCCAACTTGAAGTACGTGG
genomic: AACCCCAACTATAAAGGAAAATGGAAGGCACCATTGATTGATAACCCAGgttcattata ... catttgtcagATTTCAAGGATGACCCCGACCTCTATGTTTTCCCCAACTTGAAGTACGTGG
EST: gi|193590799|gb|FK545904.1|FK545904
EST:     GAACCCCAACTATAAAGGAAGATGGAAGGCACCATTGATTGATAACCCAG                         ATTTCAAGGATGACCCCGACCTCTATGTTTTCCCCAACTTGAAGTACGTGG
genomic: GAACCCCAACTATAAAGGAAAATGGAAGGCACCATTGATTGATAACCCAGgttcattata ... catttgtcagATTTCAAGGATGACCCCGACCTCTATGTTTTCCCCAACTTGAAGTACGTGG
EST: gi|7147106|gb|AW509028.1|AW509028
EST:     GAACCCCAACTATAAAGGAAAATGGAAGGCACCATTGATTGATAACCCAG                         ATTTCAAGGATGACCCCGACCTCTATGTTTTCCCCAACTTGAAGTACGTGG
genomic: GAACCCCAACTATAAAGGAAAATGGAAGGCACCATTGATTGATAACCCAGgttcattata ... catttgtcagATTTCAAGGATGACCCCGACCTCTATGTTTTCCCCAACTTGAAGTACGTGG
EST: gi|14259040|gb|BG881948.1|BG881948
EST:     GAACCCCAACTATAAAGGAAAATGGAAGGCACCATTGATTGATAACCCAG                         ATTTCAAGGATGACCCCGACCTCTATGTTTTCCCCAACTTGAAGTACGTGG
genomic: GAACCCCAACTATAAAGGAAAATGGAAGGCACCATTGATTGATAACCCAGgttcattata ... catttgtcagATTTCAAGGATGACCCCGACCTCTATGTTTTCCCCAACTTGAAGTACGTGG
EST: gi|208075929|gb|GD878610.1|GD878610
EST:     GAACCCCAACTATAAAGGAAAATGGAAGGCACCATTGATTGATAACCCAG                         ATTTCAAGGATGACCCCGACCTCTATGTTTTCCCCAACTTGAAGTACGTGG
genomic: GAACCCCAACTATAAAGGAAAATGGAAGGCACCATTGATTGATAACCCAGgttcattata ... catttgtcagATTTCAAGGATGACCCCGACCTCTATGTTTTCCCCAACTTGAAGTACGTGG
EST: gi|208067283|gb|GD862683.1|GD862683
EST:     GCACCATTGATTGATAACCCAG                         ATTTCAAGGATGAC
genomic: GCACCATTGATTGATAACCCAGgttcattata ... catttgtcagATTTCAAGGATGAC
EST: gi|208073441|gb|GD867358.1|GD867358
EST:     GAACCCCAACTATAAAGGAAAATGGAAGGCACCATTGATTGATAACCCAG                         ATTTCAAGGATGACCCCGACCTCTATGTTCTCCCCAACTTGAAGTACGTGG
genomic: GAACCCCAACTATAAAGGAAAATGGAAGGCACCATTGATTGATAACCCAGgttcattata ... catttgtcagATTTCAAGGATGACCCCGACCTCTATGTTTTCCCCAACTTGAAGTACGTGG
EST: gi|17518857|gb|BM187899.1|BM187899
EST:     GAACCCCAACTATAAAGGAAAATGGAAGGCACCATTGATTGATAACCCAG                         ATTTCAAGGATGACCCCGACCTCTATGTTTTCCCCAACTTGAAGTACGTGG
genomic: GAACCCCAACTATAAAGGAAAATGGAAGGCACCATTGATTGATAACCCAGgttcattata ... catttgtcagATTTCAAGGATGACCCCGACCTCTATGTTTTCCCCAACTTGAAGTACGTGG
EST: gi|24135631|gb|BU926141.1|BU926141
EST:     GAACCCCAACTATAAAGGAAAATGGAAGGCACCATTGATTGATAACCCAG                         ATTTCAAGGATGACCCCGACCTCTATGTTTTCCCCAACTTGAAGTACGTGG
genomic: GAACCCCAACTATAAAGGAAAATGGAAGGCACCATTGATTGATAACCCAGgttcattata ... catttgtcagATTTCAAGGATGACCCCGACCTCTATGTTTTCCCCAACTTGAAGTACGTGG
EST: gi|208257302|gb|GE056717.1|GE056717
EST:     GAACCCCAACTATAAAGGAAAATGGAAGGCACCATTGATTGATAACCCAG                         ATTTCAAGGATGAACCCCGACCTCTATGTTTTCC
genomic: GAACCCCAACTATAAAGGAAAATGGAAGGCACCATTGATTGATAACCCAGgttcattata ... catttgtcagATTTCAAGGATGA-CCCCGACCTCTATGTTTTCC
EST: gi|298191551|gb|HO039030.1|HO039030
EST:     GAACCCCAACTATAAAGGAAAATGGAAGGCACCATTGATTGATAACCCAG                         ATTTCAAGGATGACCCCGACCTATATGTTTTCCCCAACTTGAAGTACGTGG
genomic: GAACCCCAACTATAAAGGAAAATGGAAGGCACCATTGATTGATAACCCAGgttcattata ... catttgtcagATTTCAAGGATGACCCCGACCTCTATGTTTTCCCCAACTTGAAGTACGTGG
EST: gi|13789722|gb|BG652313.1|BG652313
EST:     TGATTGATAACCCAG                         ATTTCAAGGATGACCCCGACCTCTATGTTTTCCCCAACTTGAAGTACGTGG
genomic: TGATTGATAACCCAGgttcattata ... catttgtcagATTTCAAGGATGACCCCGACCTCTATGTTTTCCCCAACTTGAAGTACGTGG
EST: gi|120529175|gb|EH257309.1|EH257309
EST:     GAACCCCAACTATAAAGGAAAATGGAAGGCACCATTGATTGATAACCCAG                         ATTTCAAGGATGACCCCGACCTCTATGTTTTCCCCAACTTGAAGTACGTGG
genomic: GAACCCCAACTATAAAGGAAAATGGAAGGCACCATTGATTGATAACCCAGgttcattata ... catttgtcagATTTCAAGGATGACCCCGACCTCTATGTTTTCCCCAACTTGAAGTACGTGG
EST: gi|7233127|gb|AW568477.1|AW568477
EST:     GAACCCCAACTATAAAGGAAAATGGAAGGCACCATTGATTGATAACCCAG                         ATTTCAAAGATGACCCCGACCT
genomic: GAACCCCAACTATAAAGGAAAATGGAAGGCACCATTGATTGATAACCCAGgttcattata ... catttgtcagATTTCAAGGATGACCCCGACCT
EST: gi|207836212|gb|GD807455.1|GD807455
EST:     GAACCCCAACTATAAAGGAAAATGGAAGGCACCATTGATTGATAACCCAG                         ATTTCAAGGATGACCCCGACCTCTATGTTTTCCCCAACTTGAAGTACGTGG
genomic: GAACCCCAACTATAAAGGAAAATGGAAGGCACCATTGATTGATAACCCAGgttcattata ... catttgtcagATTTCAAGGATGACCCCGACCTCTATGTTTTCCCCAACTTGAAGTACGTGG
EST: gi|193528649|gb|FK486867.1|FK486867
EST:     GAACCCCAACTATAAAGGAAAATGGAAGGCACCATTGATTGATAACCCAG                         ATTTCAAGGATGACCCCGA
genomic: GAACCCCAACTATAAAGGAAAATGGAAGGCACCATTGATTGATAACCCAGgttcattata ... catttgtcagATTTCAAGGATGACCCCGA
EST: gi|12689947|gb|BG156283.1|BG156283
EST:     GAACCCCAACTATAAAGGAAAATGGAAGGCACCATTGATTGATAACCCAG                         ATTTCAAGGATGACCCCGACCTCTATGTTTTCCCCAACTTGAAGTACGTGG
genomic: GAACCCCAACTATAAAGGAAAATGGAAGGCACCATTGATTGATAACCCAGgttcattata ... catttgtcagATTTCAAGGATGACCCCGACCTCTATGTTTTCCCCAACTTGAAGTACGTGG
EST: gi|21677154|gb|BQ629505.1|BQ629505
EST:     GAACCCCAACTATAAAGGAAAATGGAAGGCACCATTGATTGATAACCCAG                         ATTTCAAGGATGACCCCGACCTCTATGTTTTCCCCAACTTGAAGTACGTGG
genomic: GAACCCCAACTATAAAGGAAAATGGAAGGCACCATTGATTGATAACCCAGgttcattata ... catttgtcagATTTCAAGGATGACCCCGACCTCTATGTTTTCCCCAACTTGAAGTACGTGG
EST: gi|19938515|gb|BQ081756.1|BQ081756
EST:     GAACCCCAACTATAAAGGAAAATGGAAGGCACCATTGATTGATAACCCAG                         ATTTCAAGGATGACCCCGACCTCTATGTTTTCCCCAACTTGAAGTACGTGG
genomic: GAACCCCAACTATAAAGGAAAATGGAAGGCACCATTGATTGATAACCCAGgttcattata ... catttgtcagATTTCAAGGATGACCCCGACCTCTATGTTTTCCCCAACTTGAAGTACGTGG
EST: gi|6481781|gb|AW201052.1|AW201052
EST:     GAACCCCAACTATAAAGGAAAATGGAAGGCACCATTGATTGATAACCCAG                         ATTTCAAGGATGACCCCGACCTCTATGTTTTCCCCAACTTGAAGTACGTGG
genomic: GAACCCCAACTATAAAGGAAAATGGAAGGCACCATTGATTGATAACCCAGgttcattata ... catttgtcagATTTCAAGGATGACCCCGACCTCTATGTTTTCCCCAACTTGAAGTACGTGG
EST: gi|7029401|gb|AW459184.1|AW459184
EST:     GATTGATAACCCAG                         ATTTCAAGGATGACCCCGACCTCTATGTTTTCCCCAACTTGAAGTACGTGG
genomic: GATTGATAACCCAGgttcattata ... catttgtcagATTTCAAGGATGACCCCGACCTCTATGTTTTCCCCAACTTGAAGTACGTGG
EST: gi|208261725|gb|GE060500.1|GE060500
EST:     GAACCCCAACTATAAAGGAAAATGGAAGGCACCATTGATTGATAACCCAG                         ATTTCAAGGATGACCCCGACCTCTATGTTTTCCCCAACTTGAAGTACGTGG
genomic: GAACCCCAACTATAAAGGAAAATGGAAGGCACCATTGATTGATAACCCAGgttcattata ... catttgtcagATTTCAAGGATGACCCCGACCTCTATGTTTTCCCCAACTTGAAGTACGTGG
EST: gi|207765184|gb|GD735457.1|GD735457
EST:     GAACCCCAACTATAAAGGAAAATGGAAGGCACCATTGATTGATAACCCAG                         ATTTCAAGGATGACCCCGACCTCTATGTTTTCCCCAACTTGAAGTACGTGG
genomic: GAACCCCAACTATAAAGGAAAATGGAAGGCACCATTGATTGATAACCCAGgttcattata ... catttgtcagATTTCAAGGATGACCCCGACCTCTATGTTTTCCCCAACTTGAAGTACGTGG
EST: gi|18735107|gb|BM528567.1|BM528567
EST:     GAACCCCAACTATAAAGGAAAATGGAAGGCACCATTGATTGATAACCCAG                         ATTTCAAGGATGACCCCGACCTCTATGTTTTCCCCAACTTGAAGTACGTGG
genomic: GAACCCCAACTATAAAGGAAAATGGAAGGCACCATTGATTGATAACCCAGgttcattata ... catttgtcagATTTCAAGGATGACCCCGACCTCTATGTTTTCCCCAACTTGAAGTACGTGG
EST: gi|193436294|gb|FK399058.1|FK399058
EST:     GAACCCCAACTATAAAGGAAAATGGAGGGCACCATTGATTGATAACCCAG                         ATTTCAAGGATGACCCCGA
genomic: GAACCCCAACTATAAAGGAAAATGGAAGGCACCATTGATTGATAACCCAGgttcattata ... catttgtcagATTTCAAGGATGACCCCGA
EST: gi|151411454|gb|EV281265.1|EV281265
EST:     GAACCCCAACTATAAAGGAAAATGGAAGGCACCATTGATTGATAACCCAG                         ATTTCAAGGATGACCCCGACCTCTATGTTTTCCCCAACTTGAAGTACGTGG
genomic: GAACCCCAACTATAAAGGAAAATGGAAGGCACCATTGATTGATAACCCAGgttcattata ... catttgtcagATTTCAAGGATGACCCCGACCTCTATGTTTTCCCCAACTTGAAGTACGTGG
EST: gi|193655943|gb|FK605299.1|FK605299
EST:     GAACCCCAACTATAAAGGAAAATGGAAGGCACCATTGATTGATAACCCAG                         ATTTCAAGGATGACCCCGACCTCTATGTTTTCCCCAACTTGAAGTACGTGG
genomic: GAACCCCAACTATAAAGGAAAATGGAAGGCACCATTGATTGATAACCCAGgttcattata ... catttgtcagATTTCAAGGATGACCCCGACCTCTATGTTTTCCCCAACTTGAAGTACGTGG
EST: gi|208156135|gb|GD952805.1|GD952805
EST:     GAACCCCAACTATAAAGGAAAATGGAAGGCACCATTGATTGATAACCCAG                         ATTTCAAGGATGACCCCGACCTCTATGTTTTCCCCAACTTGAAGTACGTGG
genomic: GAACCCCAACTATAAAGGAAAATGGAAGGCACCATTGATTGATAACCCAGgttcattata ... catttgtcagATTTCAAGGATGACCCCGACCTCTATGTTTTCCCCAACTTGAAGTACGTGG
EST: gi|207708279|gb|GD690423.1|GD690423
EST:     ACCCCAACTATAAAGGAAAATGGAAGGCACCATTGTATTTGATAACCCAG                         ATTTCAAGGATGACCCCGACCTCTATGTTTTCCCCAACTTGAAGTACGTGG
genomic: ACCCCAACTATAAAGGAAAATGGAAGGCACCATTG-ATT-GATAACCCAGgttcattata ... catttgtcagATTTCAAGGATGACCCCGACCTCTATGTTTTCCCCAACTTGAAGTACGTGG
EST: gi|19053178|gb|BM731845.1|BM731845
EST:     GAACCCCAACTATAAAGGAAAATGGAAGGCACCATTGATTGATAACCCAG                         ATTTCAAGGATGACCCCGACCTCTATGTTTTCCCCAACTTGAAGTACGTGG
genomic: GAACCCCAACTATAAAGGAAAATGGAAGGCACCATTGATTGATAACCCAGgttcattata ... catttgtcagATTTCAAGGATGACCCCGACCTCTATGTTTTCCCCAACTTGAAGTACGTGG
EST: gi|308097864|gb|HO761035.1|HO761035
EST:     GAACCCCAACTATAAAGGAAAATGGAAGGCACCATTGATTGATAACCCAG                         ATTTCAAGGATGACCCCGACCTCTATGTTTTCCCCAACTTGAAGT
genomic: GAACCCCAACTATAAAGGAAAATGGAAGGCACCATTGATTGATAACCCAGgttcattata ... catttgtcagATTTCAAGGATGACCCCGACCTCTATGTTTTCCCCAACTTGAAGT
EST: gi|193361799|gb|FK327745.1|FK327745
EST:     GAACCCCAACTATAAAGGAAAATGGAAGGCACCATTGATTGATAACCCAG                         ATTTCAAGGATGACCCCCGACCTCTATGTTTACCCCAACTTGAAGTACGTG
genomic: GAACCCCAACTATAAAGGAAAATGGAAGGCACCATTGATTGATAACCCAGgttcattata ... catttgtcagATTTCAAGGATGACCCC-GACCTCTATGTTTTCCCCAACTTGAAGTACGTG
EST: gi|18040310|gb|BM308604.1|BM308604
EST:     GAACCCCAACTATAAAGGAAAATGGAAGGCACCATTGATTGATAACCCAG                         ATTTCAAGGATGACCCCGACCTCTATGTTTTCCCCAACTTTGA-GTACGTG
genomic: GAACCCCAACTATAAAGGAAAATGGAAGGCACCATTGATTGATAACCCAGgttcattata ... catttgtcagATTTCAAGGATGACCCCGACCTCTATGTTTTCCCCAACTT-GAAGTACGTG
EST: gi|208074731|gb|GD870734.1|GD870734
EST:     GAACCCCAACTATAAAGGAAAATGGAAGGCACCATTGATTGATAACCCAG                         ATTTCAAGGATGACCCCGACCTCTATGTTTTCCCCAACTTGAAGTACGTGG
genomic: GAACCCCAACTATAAAGGAAAATGGAAGGCACCATTGATTGATAACCCAGgttcattata ... catttgtcagATTTCAAGGATGACCCCGACCTCTATGTTTTCCCCAACTTGAAGTACGTGG
EST: gi|208332038|gb|GE127701.1|GE127701
EST:     GAACCCCAACTATAAAGGAAAATGGAAGGCACCATTGATTGATAACCCAG                         ATTTCAAGGATGACCCCGACCTCTATGTTCTCCCCAACTTGAAGTACGTGG
genomic: GAACCCCAACTATAAAGGAAAATGGAAGGCACCATTGATTGATAACCCAGgttcattata ... catttgtcagATTTCAAGGATGACCCCGACCTCTATGTTTTCCCCAACTTGAAGTACGTGG
EST: gi|193343559|gb|FK306923.1|FK306923
EST:     GAACCCCAACTATAAAGGAAAATGGAAGGCACCATTGATTGATAACCCAG                         ATTTCAAGGATGACCCCGACCTCTATGTTTTCCCCAACTTGAAGTACGTGG
genomic: GAACCCCAACTATAAAGGAAAATGGAAGGCACCATTGATTGATAACCCAGgttcattata ... catttgtcagATTTCAAGGATGACCCCGACCTCTATGTTTTCCCCAACTTGAAGTACGTGG
EST: gi|4290764|gb|AI441665.1|AI441665
EST:     GAACCCCAACTATAAAGGAAAATGGAAGGCACCATTGATTGATAACCCAG                         ATTTCAAGGATGACCCCGACCTCTATGTTTTCCCCAACTTGAAGTACGTGG
genomic: GAACCCCAACTATAAAGGAAAATGGAAGGCACCATTGATTGATAACCCAGgttcattata ... catttgtcagATTTCAAGGATGACCCCGACCTCTATGTTTTCCCCAACTTGAAGTACGTGG
EST: gi|208330952|gb|GE128557.1|GE128557
EST:     AAGGCACCATTGATTGATAACCCAG                         ATTTCAAGGATGACCCCGACCTCTATGTTTTCCCCAACTTGAAGTACGTGG
genomic: AAGGCACCATTGATTGATAACCCAGgttcattata ... catttgtcagATTTCAAGGATGACCCCGACCTCTATGTTTTCCCCAACTTGAAGTACGTGG
EST: gi|23728381|gb|BU762243.1|BU762243
EST:     GAACCCCAACTATAAAGGAAAATGGAAGGCACCATTGATTGATAACCCAG                         ATTTCAAGGATGACCCCGACCTCTATGTTTTCCCCAACTTGAAGTACGTGG
genomic: GAACCCCAACTATAAAGGAAAATGGAAGGCACCATTGATTGATAACCCAGgttcattata ... catttgtcagATTTCAAGGATGACCCCGACCTCTATGTTTTCCCCAACTTGAAGTACGTGG
EST: gi|193707216|gb|FK644954.1|FK644954
EST:     GAA-CCCAACTATAAAGGAAGATGGAAGGCACCATTGATTGATAACCCAG                         ATTTCAAGGATGACCCCGACCTCTATGTTTTCCCCAACTTGAAGTACGTGG
genomic: GAACCCCAACTATAAAGGAAAATGGAAGGCACCATTGATTGATAACCCAGgttcattata ... catttgtcagATTTCAAGGATGACCCCGACCTCTATGTTTTCCCCAACTTGAAGTACGTGG
EST: gi|208332930|gb|GE129125.1|GE129125
EST:     TATAAAGGAAAATGGAAGGCACCATTGATTTGATAACCCAG                         ATTTCAAGGATGACCCCGACCTCTATGTTTTCTCCAACTTGAAGTACGTGG
genomic: TATAAAGGAAAATGGAAGGCACCATTGA-TTGATAACCCAGgttcattata ... catttgtcagATTTCAAGGATGACCCCGACCTCTATGTTTTCCCCAACTTGAAGTACGTGG
EST: gi|19453199|gb|BM954609.1|BM954609
EST:     GAACCCCAACTATAAAGGAAAATGGAAGGCACCATTGATTGATAACCCAG                         ATTTCAAGGATGACCCCGACCTATATGTTTTCCCCAACTTGAAGTACGTGG
genomic: GAACCCCAACTATAAAGGAAAATGGAAGGCACCATTGATTGATAACCCAGgttcattata ... catttgtcagATTTCAAGGATGACCCCGACCTCTATGTTTTCCCCAACTTGAAGTACGTGG
EST: gi|7234592|gb|AW569928.1|AW569928
EST:     GAACCCCAACTATAAAGGAAAATGGAAGGCACCATTGATTGATAACCCAG                         ATTTCAAGGATGACCCCGACCTCTATGTTTTCCCCAACTTGAAGTACGTGG
genomic: GAACCCCAACTATAAAGGAAAATGGAAGGCACCATTGATTGATAACCCAGgttcattata ... catttgtcagATTTCAAGGATGACCCCGACCTCTATGTTTTCCCCAACTTGAAGTACGTGG
EST: gi|120493122|gb|EH221289.1|EH221289
EST:     GAACCCCAAATATAAAGGACAATGGAAGGCACCATTGATTGATAACCCAG                         ATTTCAACGATGAACCCGAC-TCTA
genomic: GAACCCCAACTATAAAGGAAAATGGAAGGCACCATTGATTGATAACCCAGgttcattata ... catttgtcagATTTCAAGGATGACCCCGACCTCTA
EST: gi|208044942|gb|GD840162.1|GD840162
EST:     GAACCCCAACTATAAAGGAAAATGGAAGGCACCATTGATTGATAACCCAG                         ATTTCAAGGATGACCCCGACCTCTATGTTTTCC
genomic: GAACCCCAACTATAAAGGAAAATGGAAGGCACCATTGATTGATAACCCAGgttcattata ... catttgtcagATTTCAAGGATGACCCCGACCTCTATGTTTTCC
EST: gi|208285399|gb|GE089125.1|GE089125
EST:     AAAGGAAAATTGGTAAGGCACCATTTGATTGATAACCCAG                         ATTTCAAGGATGACCCCGACCTCTATGTTTTCCCC-ACTTGAAGTACGTGG
genomic: AAAGGAAAA-TGG-AAGGCACCA-TTGATTGATAACCCAGgttcattata ... catttgtcagATTTCAAGGATGACCCCGACCTCTATGTTTTCCCCAACTTGAAGTACGTGG
EST: gi|208221973|gb|GE017723.1|GE017723
EST:     AAGGCACCATTGATTGATAACCCAG                         ATTTCAAGGATGACCCCGACCTCTATG-TTTCCCCAACTTGAAGTACGTGG
genomic: AAGGCACCATTGATTGATAACCCAGgttcattata ... catttgtcagATTTCAAGGATGACCCCGACCTCTATGTTTTCCCCAACTTGAAGTACGTGG
EST: gi|7234631|gb|AW569967.1|AW569967
EST:     GAACCCCAACTATAAAGGAAAATGGAAGGCACCATTGATTGATAACCCAG                         ATTTCAAGGATGACCCCGACCTCTATGTTTTCCCCAACTTGAAGTACGTGG
genomic: GAACCCCAACTATAAAGGAAAATGGAAGGCACCATTGATTGATAACCCAGgttcattata ... catttgtcagATTTCAAGGATGACCCCGACCTCTATGTTTTCCCCAACTTGAAGTACGTGG


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

aaattattttgcattataagataaatatattcaacatttgaaaaacatttgtcagATTTCAAGGATGACCCCGACCTCTATGTTTTCCCCAACTTGAAGTACGTGGGGATTGAATTGTGGCAG
            attataagataaatat  TA-rich tract
















Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
gttcattatacactcttctacaccgtagtaatatttttataaattattttgcattataagataaatatattcaacatttgaaaaacatttgtcagATTTCAAGGATGACCCCGACCTCTATGTTTTCCCCAACTTGAAGTACGTGGGGATTGAATTGTGGCAG

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  TTGAAG