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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaatgataaatatcttttattttgaaaatttagaaaaatcagtttcatttgaatgaatgtgcgaagatttgatgctccataattgttacttgctctgagtttggcttttagtgatgtatcttttacccctctttcagTGCTTCTTCCCTCAGAATTTGATTGCTGGTATTAGAACCCCGCTATTCATTCTTAATACTGCCTATGACTCATGGCAG

Basic information

species Glycine max
transcript GLYMA10G28230.1
intron # 8
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|15663644|gb|BI701015.1|BI701015
EST:     TGCAAAAGAATCTGCCACACATTTGTACTAGTCACCTTGATCCCACTTCG                         TGCTTCTTCCCTCAGAATTTGATTGCTGGTATTAGAACCCCGCTATTCATT
genomic: TGCAAAAGAATCTGCCACACATTTGTACTAGTCACCTTGATCCCACTTCGgtaatgataa ... cctctttcagTGCTTCTTCCCTCAGAATTTGATTGCTGGTATTAGAACCCCGCTATTCATT
EST: gi|8284433|gb|BE021992.1|BE021992
EST:     TGCAAAAGAATCTGCCACACATTTGTACTAGTCACCTTGATCCCACTTCG                         TGCTTCTTCCCTCAGAATTTGATTGCTGGTATTAGAACCCCGCTATTCATT
genomic: TGCAAAAGAATCTGCCACACATTTGTACTAGTCACCTTGATCCCACTTCGgtaatgataa ... cctctttcagTGCTTCTTCCCTCAGAATTTGATTGCTGGTATTAGAACCCCGCTATTCATT


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

ttgttacttgctctgagtttggcttttagtgatgtatcttttacccctctttcagTGCTTCTTCCCTCAGAATTTGATTGCTGGTATTAGAACCCCGCTATTCATTCTTAATACTGCCTATGACTCATGGCAG
                                tgtatcttttacccct  CT-rich tract
                                  tatctttta  TA-rich tract