1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' |
...cccagaagtctcaatgttttcttttatatataatttaacatttaaagctacattttttctggctgtttcattgtactcgttttcactgtattatcatcagGACGGGGTAGAGGCAGAGGTAGCTATCAGTCAGATGCTCCAAGAGGGCGTTTCAATCCAAGGAACTTTGGCAGGGGACATGGCCAAGATGGCAGTGATAG
species | Glycine max |
transcript | GLYMA10G26640.1 |
intron # | 8 |
splice site | 3' |
intron type | U2 |
EST: ATACATTGAAGAACGGAGACCAAACAGTAACATCCCTTCTCGAGGAGGAA GACGGGGTAGAGGCAGAGGTAGCTATCAGTCAGATGCTCCAAGAGGGCGTTEST: gi|22933391|gb|BU550530.1|BU550530
genomic: ATACATTGAAGAACGGAGACCAAACAGTAACATCCCTTCTCGAGGAGGAAgtatgctttt ... ttatcatcagGACGGGGTAGAGGCAGAGGTAGCTATCAGTCAGATGCTCCAAGAGGGCGTT
EST: ATACATTGAAGAACGGAGACCAAACAGTAACATCCCTTCTCGAGGAGGAA GACGGGGTAGAGGCAGAGGTAGCTATCAGTCAGATGCTCCAAGAGGGCGTTEST: gi|193490036|gb|FK455455.1|FK455455
genomic: ATACATTGAAGAACGGAGACCAAACAGTAACATCCCTTCTCGAGGAGGAAgtatgctttt ... ttatcatcagGACGGGGTAGAGGCAGAGGTAGCTATCAGTCAGATGCTCCAAGAGGGCGTT
EST: TTGAAGAACGGAGACCAAACAGTAACATCCCTTCTCGAGGAGGAA GACGGGGTAGAGGCAGAGGTAGCTATCAGTCAGATGCTCCAAGAGGGCGTTEST: gi|11274988|gb|BF325312.1|BF325312
genomic: TTGAAGAACGGAGACCAAACAGTAACATCCCTTCTCGAGGAGGAAgtatgctttt ... ttatcatcagGACGGGGTAGAGGCAGAGGTAGCTATCAGTCAGATGCTCCAAGAGGGCGTT
EST: ATACATTGAAGAACGGAGACCAAACAGTAACATCCCTTCTCGAGGAGGAA GACGGGGTAGAGGCAGAGGTAGCTATCAGTCAGATGCTCCAAGAGGGCGTT
genomic: ATACATTGAAGAACGGAGACCAAACAGTAACATCCCTTCTCGAGGAGGAAgtatgctttt ... ttatcatcagGACGGGGTAGAGGCAGAGGTAGCTATCAGTCAGATGCTCCAAGAGGGCGTT
agctacattttttctggctgtttcattgtactcgttttcactgtattatcatcagGACGGGGTAGAGGCAGAGGTAGCTATCAGTCAGATGCTCCAAGAGGGCGTTTCAATCCAAGGAACTTTGGCAGGGGACATGGCCAAGATGGCAGTGATAG
attttttct TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| cccagaagtctcaatgttttcttttatatataatttaacatttaaagctacattttttctggctgtttcattgtactcgttttcactgtattatcatcagGACGGGGTAGAGGCAGAGGTAGCTATCAGTCAGATGCTCCAAGAGGGCGTTTCAATCCAAGGAACTTTGGCAGGGGACATGGCCAAGATGGCAGTGATAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGGAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGATG
cccagaa
- - - - - -caatgtt
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -gctgttt
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -cactgta