1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' |
...tgttgatctgttcatatttcacaccattatttttttatctgttttcatgcggtagtattattgtaagcgatgcttcacttttcattttattttcttgcagGATTAGAGCGAAGGTTTTCAAATAGTCCTAGCACTGTGGACTTCTTTAATGTCAGGTTCTAGAGTCAAACTCTTAGTAATTTTCTATGAAGTGTACTTGA
species | Glycine max |
transcript | GLYMA10G24350.2 |
intron # | 8 |
splice site | 3' |
intron type | U2 |
EST: CTAATGATACACAAGAGCAGAGAAATACTGATTCTGCTTCAATGGAACAG GATTAGAGCGAAGGTTTTCAAATAGTCCTAGCACTGTGGACTTCTTTAATGEST: gi|193339872|gb|FK306563.1|FK306563
genomic: CTAATGATACACAAGAGCAGAGAAATACTGATTCTGCTTCAATGGAACAGgtatatggcc ... tttcttgcagGATTAGAGCGAAGGTTTTCAAATAGTCCTAGCACTGTGGACTTCTTTAATG
EST: CTAATGATACACAAGAGCAGAGAAATACTGATTCTGCTTCAATGGAACAG GATTAGAGCGAAGGTCTTCAAATAGTCCTAGCACTGTGGACTTCTTTAATGEST: gi|151403344|gb|EV273154.1|EV273154
genomic: CTAATGATACACAAGAGCAGAGAAATACTGATTCTGCTTCAATGGAACAGgtatatggcc ... tttcttgcagGATTAGAGCGAAGGTTTTCAAATAGTCCTAGCACTGTGGACTTCTTTAATG
EST: CTAATGATACACAAGAGCAGAGAAATACTGATTCTGCTTCAATGGAACAG GATTAGAGCGAAGGTTTTCAAATAGTCCTAGCACTGTGGACTTCTTTAATGEST: gi|213605917|gb|DB983622.1|DB983622
genomic: CTAATGATACACAAGAGCAGAGAAATACTGATTCTGCTTCAATGGAACAGgtatatggcc ... tttcttgcagGATTAGAGCGAAGGTTTTCAAATAGTCCTAGCACTGTGGACTTCTTTAATG
EST: CTAATGATACACAAGAGCAGAGAAATACTGATTCTGCTTCAATGGAACAG GATTAGAGCGAAGGTTTTCAAATAGTCCTAGCACTGTGGACTTCTTTAATGEST: gi|192309061|gb|FG999036.1|FG999036
genomic: CTAATGATACACAAGAGCAGAGAAATACTGATTCTGCTTCAATGGAACAGgtatatggcc ... tttcttgcagGATTAGAGCGAAGGTTTTCAAATAGTCCTAGCACTGTGGACTTCTTTAATG
EST: CTAATGATACACAAGAGCAGAGAAATACTGATTCTGCTTCAATGGAACAG GATTAGAGCGAAGGTTTTCAAATAGTCCTAGCACTGTGGACTTCTTTAATGEST: gi|26268201|gb|CA819264.1|CA819264
genomic: CTAATGATACACAAGAGCAGAGAAATACTGATTCTGCTTCAATGGAACAGgtatatggcc ... tttcttgcagGATTAGAGCGAAGGTTTTCAAATAGTCCTAGCACTGTGGACTTCTTTAATG
EST: CTAATGATACACAAGAGCAGAGAAATACTGATTCTGCTTCAATGGAACAG GATTAGAGCGAAGGTTTTCAAATAGTCCTAGCACTGTGGACTTCTTTAATGEST: gi|10252487|gb|BE820253.1|BE820253
genomic: CTAATGATACACAAGAGCAGAGAAATACTGATTCTGCTTCAATGGAACAGgtatatggcc ... tttcttgcagGATTAGAGCGAAGGTTTTCAAATAGTCCTAGCACTGTGGACTTCTTTAATG
EST: CTAATGATACACAAGAGCAGAGAAATACTGATTCTGCTTCAATGGAACAG GATTAGAGCGAAGGTTTTCAAATAGTCCTAGCACTGTGGACTTCTTTAATGEST: gi|58023144|gb|CX709885.1|CX709885
genomic: CTAATGATACACAAGAGCAGAGAAATACTGATTCTGCTTCAATGGAACAGgtatatggcc ... tttcttgcagGATTAGAGCGAAGGTTTTCAAATAGTCCTAGCACTGTGGACTTCTTTAATG
EST: CTAATGATACACAAGAGCAGAGAAATACTGATTCTGCTTCAATGGAACAG GATTAGAGCGAAGGTTTTCAAATAGTCCTAGCACTGTGGACTTCTTTAATGEST: gi|15203108|gb|BI425876.1|BI425876
genomic: CTAATGATACACAAGAGCAGAGAAATACTGATTCTGCTTCAATGGAACAGgtatatggcc ... tttcttgcagGATTAGAGCGAAGGTTTTCAAATAGTCCTAGCACTGTGGACTTCTTTAATG
EST: CTAATGATACACAAGAGCAGAGAAATACTGATTCTGCTTCAATGGAACAG GATTAGAGCGAAGGTTTTCAAATAGTCCTAGCACTGTGGACTTCTTTAATGEST: gi|193344201|gb|FK313613.1|FK313613
genomic: CTAATGATACACAAGAGCAGAGAAATACTGATTCTGCTTCAATGGAACAGgtatatggcc ... tttcttgcagGATTAGAGCGAAGGTTTTCAAATAGTCCTAGCACTGTGGACTTCTTTAATG
EST: CTAATGATACACAAGAGCAGAGAAATACTGATTCTGCTTCAATGGAACAG GATTAGAGCGAAGGTCTTCAAATAGTCCTAGCACTGTGGACTTCTTTAATGEST: gi|6951211|gb|AW423340.1|AW423340
genomic: CTAATGATACACAAGAGCAGAGAAATACTGATTCTGCTTCAATGGAACAGgtatatggcc ... tttcttgcagGATTAGAGCGAAGGTTTTCAAATAGTCCTAGCACTGTGGACTTCTTTAATG
EST: CTAATGATACACAAGAGCAGAGAAATACTGATTCTGCTTCAATGGAACAG GATTAGAGCGAAGGTTTTCAAATAGTCCTAGCACTGTGGACTTCTTTAATGEST: gi|192320514|gb|FK011924.1|FK011924
genomic: CTAATGATACACAAGAGCAGAGAAATACTGATTCTGCTTCAATGGAACAGgtatatggcc ... tttcttgcagGATTAGAGCGAAGGTTTTCAAATAGTCCTAGCACTGTGGACTTCTTTAATG
EST: CTAATGATACACAAGAGCAGAGAAATACTGATTCTGCTTCAATGGAACAG GATTAGAGCGAAGGTTTTCAAATAGTCCTAGCACTGTGGACTTCTTTAATGEST: gi|214008290|gb|DB989832.1|DB989832
genomic: CTAATGATACACAAGAGCAGAGAAATACTGATTCTGCTTCAATGGAACAGgtatatggcc ... tttcttgcagGATTAGAGCGAAGGTTTTCAAATAGTCCTAGCACTGTGGACTTCTTTAATG
EST: CTAATGATACACAAGAGCAGAGAAATACTGATTCTGCTTCAATGGAACAG GATTAGAGCGAAGGTTTTCAAATAGTCCTAGCACTGTGGACTTCTTTAATGEST: gi|16344759|gb|BI970354.1|BI970354
genomic: CTAATGATACACAAGAGCAGAGAAATACTGATTCTGCTTCAATGGAACAGgtatatggcc ... tttcttgcagGATTAGAGCGAAGGTTTTCAAATAGTCCTAGCACTGTGGACTTCTTTAATG
EST: CTAATGATACACAAGAGCAGAGAAATACTGATTCTGCTTCAATGGAACAG GATTAGAGCGAAGGTTTTCAAATAGTCCTAGCACTGTGGACTTCTTTAATGEST: gi|7796506|gb|AW781903.1|AW781903
genomic: CTAATGATACACAAGAGCAGAGAAATACTGATTCTGCTTCAATGGAACAGgtatatggcc ... tttcttgcagGATTAGAGCGAAGGTTTTCAAATAGTCCTAGCACTGTGGACTTCTTTAATG
EST: CTAATGATACACAAGAGCAGAGAAATACTGATTCTGCTTCAATGGAACAG GATTAGAGCGAAGGTTTTCAAATAGTCCTAGCACTGTGGACT
genomic: CTAATGATACACAAGAGCAGAGAAATACTGATTCTGCTTCAATGGAACAGgtatatggcc ... tttcttgcagGATTAGAGCGAAGGTTTTCAAATAGTCCTAGCACTGTGGACT
catgcggtagtattattgtaagcgatgcttcacttttcattttattttcttgcagGATTAGAGCGAAGGTTTTCAAATAGTCCTAGCACTGTGGACTTCTTTAATGTCAGGTTCTAGAGTCAAACTCTTAGTAATTTTCTATGAAGTGTACTTGA
cttcacttttcatttt CT-rich tract
ttttcattttattttc TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| tgttgatctgttcatatttcacaccattatttttttatctgttttcatgcggtagtattattgtaagcgatgcttcacttttcattttattttcttgcagGATTAGAGCGAAGGTTTTCAAATAGTCCTAGCACTGTGGACTTCTTTAATGTCAGGTTCTAGAGTCAAACTCTTAGTAATTTTCTATGAAGTGTACTTGA
tgttgat
- - - - - - - - - tcacacc
- - - - - - - - - - - - - - - - - - - - - -ttcatgc
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -tgtaagc