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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaatactcagtaagcatttgttgggcttgtctcttatgttttttcttcatatttgttgacttggtaaagattttcttttggacatcatcatggtcttttttgtttacttcattttatttttattttgttaacagTTACCTTGTATAAATCCTGGCTTCGACCACTCTCCTTTTAGATTTACAAAACACTCGAATGCATATATGCTTGTCTATGTACGTGAGAGTGACAAGGATA

Basic information

species Glycine max
transcript GLYMA10G23680.1
intron # 8
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA10G23680.1 (Glycine max), 3'ss of exon 8
lower sequence: LOC_Os12g30540.1 (Oryza sativa), 3'ss of exon 12
gtaatactcagtaagcatttgttgggcttgtctcttatgttttttcttcatatttgttgacttggtaaagattttcttttggacatcatcatggtcttttttgtttacttcattttatttttattttgtt--aacagTTACCTTGTATAAATCCTGGCTTCGACCACTCTCCTTTTAGATTTACAAAACACTCGAATGCATATATGCTTGTCTATGTACGTGAGAGTGACAAGGATA
              |   || ||    ||      | |   ||   | || |||   ||| || ||           |||   | ||||| ||   || | |  | |  | ||||  || |  ||| | |  ||||||| |||   ||||| ||||| ||| |  || | || |||| ||| |||||  | |||||||| || |||||||||||| | |||||||| ||||||||||
--------------gtcgtttttactattaataactgttcattaagtgca-attcactgatttagtggttgcagcaatttc--cctcatcttgtatttatgtcatcatcttatttgtttctcttttggatggaacagTTGCCTCAAATAAACCCTGGTTTCAATAACACCCCATTTAAATTCACAAAGTATTCGAATGCCTACATGCTTGTCTATATTCGTGAGAGCGACAAGGATA

upper sequence: GLYMA10G23680.1 (Glycine max), 3'ss of exon 8
lower sequence: GRMZM2G303655_T01 (Zea mays), 3'ss of exon 2
gtaatactcagtaagcatttgttgggcttgtctcttatgttttttcttcatatttgttgacttggtaaagattttcttttggacatcatcatggtcttttttgtttacttcattttatttttattttgttaacagTTACCTTGTATAAATCCTGGCTTCGACCACTCTCCTTTTAGATTTACAAAACACTCGAATGCATATATGCTTGTCTATGTACGTGAGAGTGACAAGGATA
                                   ||   || ||  | | |  |||| | |   || |    | |||  |||| |  |  |    ||  |        | ||||  | ||| | | |  ||||||| |||   ||||| ||||| ||| |  || | || |||| ||| |||||  | |||||||| || |||||||||||| |||||||||||||||| || |
----------------------------------gtaacattctttatgacaaatgttcattcaatacaa---tacttgcggac-ttgtattaactttcctc-------ttatttcttctttgtatgg--aacagTTGCCTCAAATAAACCCTGGTTTCAATAACACGCCATTTAAATTCACAAAGTATTCGAATGCCTACATGCTTGTCTATATACGTGAGAGTGACAAAGAGA

upper sequence: GLYMA10G23680.1 (Glycine max), 3'ss of exon 8
lower sequence: GRMZM2G014805_T01 (Zea mays), 3'ss of exon 12
gtaatactcagtaagcatttgttgggcttgtctcttatgttttttcttcatatttgttgacttggtaaagattttcttttggacatcatcatggtcttttttgtttacttcattttatttttattttgttaacagTTACCTTGTATAAATCCTGGCTTCGACCACTCTCCTTTTAGATTTACAAAACACTCGAATGCATATATGCTTGTCTATGTACGTGAGAGTGACAAGGATA
                                  | |  || ||| |    |||  || | |    | | | || |||  |||| |    |   | |    |  || ||| | | |  || | | |    ||||||| |||   ||||| ||||| ||| |  || | || || | ||| |||||  | || ||||| || |||||||||||| ||||||||| |||||||||||
---------------------------------gtaaaattctttataacaattcattcaataca-atacagttacttgaggacttgtataaattttccacttattgcttaactcttattctttgtatggaacagTTGCCTCAAATAAACCCTGGTTTCAATAACACACCATTCAAATTCACAAAGTATTCAAATGCCTACATGCTTGTCTATATACGTGAGAATGACAAGGATA

upper sequence: GLYMA10G23680.1 (Glycine max), 3'ss of exon 8
lower sequence: Vv13s0073g00610.t01 (Vitis vinifera), 3'ss of exon 12
gtaatactcagtaagcatttgttgggcttgtctcttatgttttttcttcatatttgttgacttggtaaagattttcttttggacatcatcatggtcttttttgtttacttcattttatttttattttgttaacagTTACCTTGTATAAATCCTGGCTTCGACCACTCTCCTTTTAGATTTACAAAACACTCGAATGCATATATGCTTGTCTATGTACGTGAGAGTGACAAGGATA
                                      ||  ||| |||| |    | || |  ||||   ||||||||      | ||  |  |||| ||  ||  |   ||| ||| | | | |    ||||| ||||    | |||||| || ||| || ||||||| || | |||||||||| |||| |||||||| |||||||| ||| ||||||| ||||||||||| |
--------------------------------------gtaatttattcacaagcatagatt--gtaa--gttttctttctacttttattttaatcttattc-ttatcaatattatatctgtctgtatccaacagCTACCCCAGACAAATCCCGGATTCAACAACTCTCCATTCAAATTTACAAAATACTCAAATGCATACATGCTTGTGTATATACGTGAAAGTGACAAGGAGA


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

ggacatcatcatggtcttttttgtttacttcattttatttttattttgttaacagTTACCTTGTATAAATCCTGGCTTCGACCACTCTCCTTTTAGATTTACAAAACACTCGAATGCATATATGCTTGTCTATGTACGTGAGAGTGACAAGGATA
                                ttttatttttatttt  CT-rich tract
              tcttttttgtttactt  TA-rich tract