Sequence
atgc intronic sequence ATGC exonic sequencegtgtatatcatttgttctctcttatactttgacttgccattttgtgtagccagccatactgacaagtgagctatttgatgtactgtcagCATTGCTTAAGCAACAAGGCATGGGTGTCAAAGGAATGACAAAAAGTACCCCTGTAAATGAGGAAATTCCACCTTTGCTTGAAGGAGGTGGAAAGATAGA
Basic information
species | Glycine max |
transcript | GLYMA10G21350.1 |
intron # | 8 |
splice site | 3' |
intron type | U2 |
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: GLYMA10G21350.2 (Glycine max), 3'ss of exon 8
lower sequence: GRMZM2G180988_T01 (Zea mays), 3'ss of exon 9
gtgtatatcatttgttctctcttatactttgacttgccattttgtgtagccagccatactgacaagtgagctatttgatgtactgtcagCATTGCTTAAGCAACAAGGCATGGGTGTCAAAGGAATGACAAAAAGTACCCCT---GTAAATGAGGAAATTCCACCTTTGCTTGAAGGAGGTGGAAAGATAGA
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--gtatgtcattcagttatgaggatattgaaagctccc-ttttgt----------atgctgataa-----taattttgtatcttttcagCTTTATTGAAGCAACAAGGTGTTGATCTCAAAGGAGCTGCAAAAAGCACCACTCCAGTAAATGAGGAAGTTCCTCCTTTGCTTGAAGGCGGTGGAAAGCT---
upper sequence: GLYMA10G21350.2 (Glycine max), 3'ss of exon 8
lower sequence: AT3G57410.1 (Arabidopsis thaliana), 3'ss of exon 10
gtgtatatcatttgttctctcttatactttgacttgccattttgtgtagccagccatactgaca-agtgagctatttgatgtactgtc-agCATTGCTTAAGCAACAAGGCATGGGTGTCAAAGGAATGACAAAAAGTACCCCTGTAAATGAGGAAATTCCACCTTTGCTTGAAGGAGGTGGAAAGATAGA
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gtaaagattgctttgatactctaaattattaataaaacaatgaaag-atctcttatccctgacttactttggtacttttcctattgtctagCATTACTTAAGCAACAAGGTGTTGGGTTAAAGGGCCTGTCAAAAAGCACACCAGTGAATGAGGATATTCCACCATTGCTTGAAGGAGGTGGAAAGTTGGA
upper sequence: GLYMA10G21350.2 (Glycine max), 3'ss of exon 8
lower sequence: Vv08s0007g08690.t01 (Vitis vinifera), 3'ss of exon 8
gtgtatatcatttgttctctcttatactttgacttgccattttgtgtagccagccatactgacaagtgagctatttgatgtactgtcagCATTGCTTAAGCAACAAGGCATGGGTGTCAAAGGAATGACAAAAAGTACCCCTGTAAATGAGGAAATTCCACCTTTGCTTGAAGGAGGTGGAAAGATAGA
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----gtaatgaccactttcatacttagtttaactggagttttt---tgggtaacattattaattgtcaatctgt---gggtaattgtagCTTTACTGAAGCAACAAGGTGTTGGCGTCAAAGGCATGTCAAAAGGTTCTCCTGTAAATGAGGAAGTCCCACCTTTGCTTGAAGCAGGTGGAAAAATTGA atgc intronic sequence ATGC exonic sequenceIntronic sequence truncated to 55 bases.tgccattttgtgtagccagccatactgacaagtgagctatttgatgtactgtcagCATTGCTTAAGCAACAAGGCATGGGTGTCAAAGGAATGACAAAAAGTACCCCTGTAAATGAGGAAATTCCACCTTTGCTTGAAGGAGGTGGAAAGATAGA
tatttgat TA-rich tract
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
gtgtatatcatttgttctctcttatactttgacttgccattttgtgtagccagccatactgacaagtgagctatttgatgtactgtcagCATTGCTTAAGCAACAAGGCATGGGTGTCAAAGGAATGACAAAAAGTACCCCTGTAAATGAGGAAATTCCACCTTTGCTTGAAGGAGGTGGAAAGATAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TTGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGTGGA