Sequence
atgc intronic sequence ATGC exonic sequence...gaatacttgagtgatgattataatcttctgtgctttttcccccttttccccttcacactatctacctcaattgtgactttttttttaaatttttttacagAATATGGGGATGTAACGGACATTTACAACTG
Basic information
species | Glycine max |
transcript | GLYMA10G11720.1 |
intron # | 8 |
splice site | 3' |
intron type | U2 |
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: GLYMA10G11720.1 (Glycine max), 3'ss of exon 8
lower sequence: Vv13s0064g00370.t01 (Vitis vinifera), 3'ss of exon 8
gaatacttgagtgatgattataatcttctgtgctttttcccccttttccccttcacactatctacctcaattgt-gactttttttttaaattttt-ttacagAATATGGGGATGTAACGGACATTTACAACTG
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gatcagttgcacaagaacttt--tcctataaagatttgtctcagtgcctcttgttatttgttgataggctttgttggtttaacttttgtatgcttattacagAGTATGGGGATGTAACGGACATCTACAACTGMapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|192322077|gb|FK012181.1|FK012181EST: GTTGAAATAGGGGAGGCTTTTATAAGGAAGCAAATCAAAG AATATGGGGATGTAACGGACATTTACAACTG
genomic: GTTGAAATAGGGGAGGCTTTTATAAGGAAGCAAATCAAAGgtgtgcttga ... ttttttacagAATATGGGGATGTAACGGACATTTACAACTG
atgc intronic sequence ATGC exonic sequenceIntronic sequence truncated to 55 bases.ttccccttcacactatctacctcaattgtgactttttttttaaatttttttacagAATATGGGGATGTAACGGACATTTACAACTG
tttttttac CT-rich tract
tcaattgtgacttttt TA-rich tract