Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   		6  
 5'  3'   		7  
 5'  3'   		8  
 5'  3'   		9  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtcagtgataccatatctggaggcttgttgacaggctataaaatgttgtcatccggagtagtgaatagtgattcttgttatcaaatatcaatgatgccatttgttttggttgcagACCGATGCTTTCTTCAAAACTAATCTCTCCGATGTATATGCTGTTGGTGATGTTGCTACTTTCCCTTTGAAATTATACGGTGAATTGAGAAGAGTTGAAC

Basic information

species Glycine max
transcript GLYMA10G07820.1
intron # 8
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA10G07820.1 (Glycine max), 3'ss of exon 8
lower sequence: AT3G52880.1 (Arabidopsis thaliana), 3'ss of exon 8
gtcagtgataccatatctggaggcttgttgacaggctataaaatgttgtcatccggagtagtgaatagtgattcttgttatcaaatatcaatgatgccatttgttttggttgcagACCGATGCTTTCTTCAAAACTAATCTCTCCGATGTATATGCTGTTGGTGATGTTGCTACTTTCCCTTTGAAATTATACGGTGAATTGAGAAGAGTTGAAC
             ||| |    |||   ||   | || |    | || | |||| |        ||  |||||    |  |  ||  | | || |   |  |||||      ||||||||||| ||||||||||| | | |  | ||||| || ||||||||||| ||||||||||||||||||||| | ||||| ||  ||||||| || || |
------------gtatttatctgctgcctgtgcgtctcttct-tcttcttatcccgtacc----attctgatttggatcttttaaattgactgct--taactgtttca--cacagACCGATGCATTCTTCAAAACAAGTGTTCCAGATGTTTACGCTGTTGGTGACGTTGCTACTTTCCCTTTGAAAATGTACGGAGACGTGAGAAGGGTCGAGC

upper sequence: GLYMA10G07820.1 (Glycine max), 3'ss of exon 8
lower sequence: Vv08s0007g03610.t01 (Vitis vinifera), 3'ss of exon 8
gtcagtgataccatatctggaggcttgttgacaggctataaaatgttgtcatccggagtagtgaatagtgattcttgttatcaaatatcaatgatgccatttgttttggttgcagACCGATGCTTTCTTCAAAACTAATCTCTCCGATGTATATGCTGTTGGTGATGTTGCTACTTTCCCTTTGAAATTATACGGTGAATTGAGAAGAGTTGAAC
    ||  | ||| |  |   |  || |  | |  |||||    |||       |  ||  || ||||   || |    |    |  |||    |   ||    ||||  ||||||| ||||  ||||||||||| | | |  | |||||||||||||| || |||||||||||||||||  ||||||| |||  |||| | |||||||||||||
----gtcgtcccaaaa-taatgagttatacatat-ctatagctagtt------tgatgtcttggatagcatttttgaaaacttgaggtcatcactctgat---ctttgactgcagACTGATGAATTCTTCAAAACAAGTGTTCCTGATGTATATGCTGTGGGAGATGTTGCTACTTTCCCACTGAAATTGTACAATGAAATTAGAAGAGTTGAAC
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|193510860|gb|FK466742.1|FK466742
EST:     AAACAGTCTTAGTCAAAGGGCAGGTTGAAGAGGAGAAGGGTGGAATCAAG                         ACCGATGCTTTCTTCAAAACTAATCTCTCCGATGTATATGCTGTTGGTGAT
genomic: AAACAGTCTTAGTCAAAGGGCAGGTTGAAGAGGAGAAGGGTGGAATCAAGgtcagtgata ... ttggttgcagACCGATGCTTTCTTCAAAACTAATCTCTCCGATGTATATGCTGTTGGTGAT
EST: gi|15664093|gb|BI701464.1|BI701464
EST:     AAACAGTCTTAGTCAAAGGGCAGGTTGAAGAGGAGAAGGGTGGAATCAAG                         ACCGATGCTTTCTTCAAAACTAATCTCTCCGATGTATATGCTGTTGGTGAT
genomic: AAACAGTCTTAGTCAAAGGGCAGGTTGAAGAGGAGAAGGGTGGAATCAAGgtcagtgata ... ttggttgcagACCGATGCTTTCTTCAAAACTAATCTCTCCGATGTATATGCTGTTGGTGAT
EST: gi|254344725|gb|GR851315.1|GR851315
EST:     AAGGGTGGAATCAAG                         ACCGATGCTTTCTTCAAAACTAATCTCTCCCGATGTATATGCTGTTGGTGA
genomic: AAGGGTGGAATCAAGgtcagtgata ... ttggttgcagACCGATGCTTTCTTCAAAACTAATCTCT-CCGATGTATATGCTGTTGGTGA
EST: gi|151411030|gb|EV280841.1|EV280841
EST:     AAACAGTCTTAGTCAAAGGGCAGGTTGAAGAGGAGAAGGGTGGAATCAAG                         ACCGATGCTTTCTTCAAAACTAATCTCTCTGATGTATATGCTGTTGGTGAT
genomic: AAACAGTCTTAGTCAAAGGGCAGGTTGAAGAGGAGAAGGGTGGAATCAAGgtcagtgata ... ttggttgcagACCGATGCTTTCTTCAAAACTAATCTCTCCGATGTATATGCTGTTGGTGAT
EST: gi|21255678|gb|BQ452566.1|BQ452566
EST:     AAACAGTCTTAGTCAAAGGGCAGGTTGAAGAGGAGAAGGGTGGAATCAAG                         ACCGATGCTTTCTTCAAAACTAATCTCTCCGATGTATATGCTGTTGGTGAT
genomic: AAACAGTCTTAGTCAAAGGGCAGGTTGAAGAGGAGAAGGGTGGAATCAAGgtcagtgata ... ttggttgcagACCGATGCTTTCTTCAAAACTAATCTCTCCGATGTATATGCTGTTGGTGAT
EST: gi|192295928|gb|FG992679.1|FG992679
EST:     AAACAGTCTTAGTCAAAGGGCAGGTTGAAGAGGAGAAGGGTGGAATCAAG                         ACCGATGCTTTCTTCAAAACTAATCTCTCCGATGTATATGCTGTTGGTGAT
genomic: AAACAGTCTTAGTCAAAGGGCAGGTTGAAGAGGAGAAGGGTGGAATCAAGgtcagtgata ... ttggttgcagACCGATGCTTTCTTCAAAACTAATCTCTCCGATGTATATGCTGTTGGTGAT
EST: gi|13790041|gb|BG652632.1|BG652632
EST:     GAGAAGGGTGGAATCAAG                         ACCGATGCTTTCTTCAAAACTAATCTCTCCGATGTATATGCTGTTGGTGAT
genomic: GAGAAGGGTGGAATCAAGgtcagtgata ... ttggttgcagACCGATGCTTTCTTCAAAACTAATCTCTCCGATGTATATGCTGTTGGTGAT
EST: gi|21677236|gb|BQ629587.1|BQ629587
EST:     AAACAGTCTTAGTCAAAGGGCAGGTTGAAGAGGAGAAGGGTGGAATCAAG                         ACCGATGCTTTCTTCAAAACTAATCTCTCCGATGTATATGCTGTTGGTGAT
genomic: AAACAGTCTTAGTCAAAGGGCAGGTTGAAGAGGAGAAGGGTGGAATCAAGgtcagtgata ... ttggttgcagACCGATGCTTTCTTCAAAACTAATCTCTCCGATGTATATGCTGTTGGTGAT
EST: gi|192295927|gb|FG992678.1|FG992678
EST:     AAACAGTCTTAGTCAAAGGGCAGGTTGAAGAGGAGAAGGGTGGAATCAAG                         ACCGATGCTTTCTTCAAAACTAATCTCTCCGATGTATATGCTGTTGGTGAT
genomic: AAACAGTCTTAGTCAAAGGGCAGGTTGAAGAGGAGAAGGGTGGAATCAAGgtcagtgata ... ttggttgcagACCGATGCTTTCTTCAAAACTAATCTCTCCGATGTATATGCTGTTGGTGAT
EST: gi|209697685|gb|BW655586.1|BW655586
EST:     AAACAGTCTTAGTCAAAGGGCAGGTTGAAGAGGAGAAGGGTGGAATCAAG                         ACCGATGCTTTCTTCAAAACTAATCTCTCCGATGTATATGCTGTTGGTGAT
genomic: AAACAGTCTTAGTCAAAGGGCAGGTTGAAGAGGAGAAGGGTGGAATCAAGgtcagtgata ... ttggttgcagACCGATGCTTTCTTCAAAACTAATCTCTCCGATGTATATGCTGTTGGTGAT
EST: gi|254331131|gb|GR843250.1|GR843250
EST:     AAACAGTCTTAGTCAAAGGGCAGGTTGAAGAGGAGAAGGGTGGAATCAAG                         ACCGATGCTTTCTTCAAAACTAATCTCTCCGATGTATATGCTGTTGGTGAT
genomic: AAACAGTCTTAGTCAAAGGGCAGGTTGAAGAGGAGAAGGGTGGAATCAAGgtcagtgata ... ttggttgcagACCGATGCTTTCTTCAAAACTAATCTCTCCGATGTATATGCTGTTGGTGAT
EST: gi|192327630|gb|FK021307.1|FK021307
EST:     AAACAGTCTTAGTCAAAGGGCAGGTTGAAGAGGAGAAGAGTGGAATCAAG                         ACCGATGCTTTCTTCAAAACTAATCTCTCCGATGTATATGCTGTTGGTGAT
genomic: AAACAGTCTTAGTCAAAGGGCAGGTTGAAGAGGAGAAGGGTGGAATCAAGgtcagtgata ... ttggttgcagACCGATGCTTTCTTCAAAACTAATCTCTCCGATGTATATGCTGTTGGTGAT
EST: gi|209701294|gb|BW653037.1|BW653037
EST:     GTTGAAGAGGAGAAGGGTGGAATCAAG                         ACCGATGCTTTCTTCAAAACTAATCTCTTCGATGTATATGCTGTTGGTGAT
genomic: GTTGAAGAGGAGAAGGGTGGAATCAAGgtcagtgata ... ttggttgcagACCGATGCTTTCTTCAAAACTAATCTCTCCGATGTATATGCTGTTGGTGAT
EST: gi|254331132|gb|GR843251.1|GR843251
EST:     AAACAGTCTTAGTCAAAGGGCAGGTTGAAGAGGAGAAGGGTGGAATCAAG                         ACCGATGCTTTCTTCAAAACTAATCTCTCCGATGTATATGCTGTTGGTGAT
genomic: AAACAGTCTTAGTCAAAGGGCAGGTTGAAGAGGAGAAGGGTGGAATCAAGgtcagtgata ... ttggttgcagACCGATGCTTTCTTCAAAACTAATCTCTCCGATGTATATGCTGTTGGTGAT
EST: gi|6913394|gb|AW394924.1|AW394924
EST:     AAACAGTCTTAGTCAAAGGGCAGGTTGAAGAGGAGAAGGGTGGAATCAAG                         ACCGATGCTTTCTTCAAAACTAATCTCTCCGATGTATATGCTGTTGGTGAT
genomic: AAACAGTCTTAGTCAAAGGGCAGGTTGAAGAGGAGAAGGGTGGAATCAAGgtcagtgata ... ttggttgcagACCGATGCTTTCTTCAAAACTAATCTCTCCGATGTATATGCTGTTGGTGAT
EST: gi|254344724|gb|GR851314.1|GR851314
EST:     AAACAGTCTTAGTCAAAGGGCAGGTTGAAGAGGAGAAGGGTGGAATCAAG                         ACCGATGCTTTCTTCAAAACTAATCTCTCCGATGTATATGCTGTTGGTGAT
genomic: AAACAGTCTTAGTCAAAGGGCAGGTTGAAGAGGAGAAGGGTGGAATCAAGgtcagtgata ... ttggttgcagACCGATGCTTTCTTCAAAACTAATCTCTCCGATGTATATGCTGTTGGTGAT
EST: gi|9204276|gb|BE330500.1|BE330500
EST:     AAACAGTCTTAGTCAAAGGGCAGGTTGAAGAGGAGAAGGGTGGAATCAAG                         ACCGATGCTTTCTTCAAAACTAATCTCTCCGATGTATATGCTGTTGGTGAT
genomic: AAACAGTCTTAGTCAAAGGGCAGGTTGAAGAGGAGAAGGGTGGAATCAAGgtcagtgata ... ttggttgcagACCGATGCTTTCTTCAAAACTAATCTCTCCGATGTATATGCTGTTGGTGAT


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

gtgaatagtgattcttgttatcaaatatcaatgatgccatttgttttggttgcagACCGATGCTTTCTTCAAAACTAATCTCTCCGATGTATATGCTGTTGGTGATGTTGCTACTTTCCCTTTGAAATTATACGGTGAATTGAGAAGAGTTGAAC
                                       tttgtttt  CT-rich tract
                 ttatcaaatatcaat  TA-rich tract