Sequence
atgc intronic sequence ATGC exonic sequencegtaatgatcaagtttctatctttttttctttttaaaaaaggacacattctttatcctgtttcttgagtcacatgtcttttggataattgtagtattaaggtacttgtaattctctttgccaatgatggaagcttttaatgtgccagGTGGACCAGCTTATTTTTGAGGAATTAATGCGTGAAAGATTTCCTAAACTGG
Basic information
species | Glycine max |
transcript | GLYMA10G05490.1 |
intron # | 8 |
splice site | 3' |
intron type | U2 |
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: GLYMA10G05490.1 (Glycine max), 3'ss of exon 8
lower sequence: Vv08s0040g03050.t01 (Vitis vinifera), 3'ss of exon 7
--------------------gtaatgatcaagtttctatctttttttctttttaaaaaaggacacattctttatcctgtttcttgagt---cacatgtct-tttggataattgtagtattaaggtacttgtaattctctttgccaatgatggaagcttttaatgtgccagGTGGACCAGCTTATTTTTGAGGAATTAATGCGTGAAAGATTTCCTAAACTGG
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gtaatgtgttttcactgtccagagttgtatggtcactatcattaatttcattctggtattagcatacacttctatgtttgttttgagttttcccctatcaaccttaataaatatgccgaggacactaatttaatagttgtgctggtttgagaaaagttctgtattgacagGTTGACCAACTTGTTTTTGAGGAGTTGATGCGTGAAAGATTTCCTAAATTAGMapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|193493307|gb|FK460057.1|FK460057EST: TGATTGAATCTCAA GTGGACCAGCTTATTTTTGAGGAATTAATGCGTGAAAGATTTCCTAAACTG
genomic: TGATTGAATCTCAAgtaatgatca ... aatgtgccagGTGGACCAGCTTATTTTTGAGGAATTAATGCGTGAAAGATTTCCTAAACTG
atgc intronic sequence ATGC exonic sequenceIntronic sequence truncated to 55 bases.gtattaaggtacttgtaattctctttgccaatgatggaagcttttaatgtgccagGTGGACCAGCTTATTTTTGAGGAATTAATGCGTGAAAGATTTCCTAAACTGG
ttttaat putative branch site (score: 3)
ttttaatgt TA-rich tract