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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtttttagagttgctacagctgctctgtattgctttgataatgatacatgagttttcaattcatttgttatacatctgcttgatacccagGGGTTTGCAGTTGCTCTTAAAGCTCGCTTGACCAAGGCTGACTTTGATGCCACTGTAGGCATTCACCCAAGTGCCGCTGAGGAATTTGTTACCATGAGGA

Basic information

species Glycine max
transcript GLYMA10G03740.2
intron # 8
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA10G03740.3 (Glycine max), 3'ss of exon 8
lower sequence: Vv07s0141g00390.t01 (Vitis vinifera), 3'ss of exon 8
gtttttagagttgctacagctgctctgtattgctttgataatgatacatgagttttcaattcatttgttata--catctgcttgatacccagGGGTTTGCAGTTGCTCTTAAAGCTCGCTTGACCAAGGCTGACTTTGATGCCACTGTAGGCATTCACCCAAGTGCCGCTGAGGAATTTGTTACCATGAGGA
            | |     |    |  |||||||   | ||  |   |   | | ||||| ||| ||| ||  | | ||    |  ||||||| |||||||||||| | | |||| ||||||| ||||| ||||||||||||||||| || || ||||| | ||| || |||||  |||| || |||||||
------------gtttgccttctaatccattgcttgacttatttttgttagatctgcaattaattggttgtattcttatggcaaaaccccagGGCTTTGCAGTTGCTGTGAGAGCTGGCTTGACAAAGGCAGACTTTGATGCCACTGTGGGAATCCACCCTACTGCAGCAGAGGAGCTTGTCACAATGAGGA
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|192322570|gb|FK014691.1|FK014691
EST:     GTGGAGACGATGCTCCTGAAATTGTGCAG                         GGGTTTGCAGTTGCTCTTAAAGCTCGCTTGACCAAGGCCGACTTTGATGCC
genomic: GTGGAGACGATGCTCCTGAAATTGTGCAGgtttttagag ... tgatacccagGGGTTTGCAGTTGCTCTTAAAGCTCGCTTGACCAAGGCTGACTTTGATGCC
EST: gi|22927402|gb|BU544541.1|BU544541
EST:     GCATATGTGTGGAGACGATGCTCCTGAAATTGTGCAG                         GGGTTTGCAGTTGCTCTTAAAGCTCGCTTGACCAAGGCTGACTTTGATGCC
genomic: GCATATGTGTGGAGACGATGCTCCTGAAATTGTGCAGgtttttagag ... tgatacccagGGGTTTGCAGTTGCTCTTAAAGCTCGCTTGACCAAGGCTGACTTTGATGCC
EST: gi|192299302|gb|FG988702.1|FG988702
EST:     AAGTTCTAGGTTTGCATATGTGTGGAGACGATGCTCCTGAAATTGTGCAG                         GGGTTTGCAGTTGCTCTTAGAGCTCGCTTGACCAAGGCTGACTTTGATGCC
genomic: AAGTTCTAGGTTTGCATATGTGTGGAGACGATGCTCCTGAAATTGTGCAGgtttttagag ... tgatacccagGGGTTTGCAGTTGCTCTTAAAGCTCGCTTGACCAAGGCTGACTTTGATGCC
EST: gi|22523475|gb|BU082286.1|BU082286
EST:     AAGTTCTAGGTTTGCATATGTGTGGAGACGATGCTCCTGAAATTGTGCAG                         GGGTTTGCAGTTGCTCTTAAAGCTCGCTTGACCAAGGCTGACTTTGATGCC
genomic: AAGTTCTAGGTTTGCATATGTGTGGAGACGATGCTCCTGAAATTGTGCAGgtttttagag ... tgatacccagGGGTTTGCAGTTGCTCTTAAAGCTCGCTTGACCAAGGCTGACTTTGATGCC
EST: gi|15001224|gb|BI322038.1|BI322038
EST:     AAGTTCTAGGTTTGCATATGTGTGGAGACGATGCTCCTGAAATTGTGCAG                         GGGTTTGCAGTTGCTCTTAAAGCTCGCTTGACCAAGGCTGACTTTGATGCC
genomic: AAGTTCTAGGTTTGCATATGTGTGGAGACGATGCTCCTGAAATTGTGCAGgtttttagag ... tgatacccagGGGTTTGCAGTTGCTCTTAAAGCTCGCTTGACCAAGGCTGACTTTGATGCC
EST: gi|15286301|gb|BI470192.1|BI470192
EST:     AAGTTCTAGGTTTGCATATGTGTGGAGACGATGCTCCTGAAATTGTGCAG                         GGGTTTGCAGTTGCTCTTAAAGCTCGCTTGACCAAGGCTGACTTTGATGCC
genomic: AAGTTCTAGGTTTGCATATGTGTGGAGACGATGCTCCTGAAATTGTGCAGgtttttagag ... tgatacccagGGGTTTGCAGTTGCTCTTAAAGCTCGCTTGACCAAGGCTGACTTTGATGCC
EST: gi|209705614|gb|BW673583.1|BW673583
EST:     CTAGGTTTGCATATGTGTGGAGACGATGCTCCTGAAATTGTGCAG                         GGGTTTGCAGTTGCTCTTAAAGCTCGCTTGACCAAGGCTGACTTTGATGCC
genomic: CTAGGTTTGCATATGTGTGGAGACGATGCTCCTGAAATTGTGCAGgtttttagag ... tgatacccagGGGTTTGCAGTTGCTCTTAAAGCTCGCTTGACCAAGGCTGACTTTGATGCC
EST: gi|19347352|gb|BM892232.1|BM892232
EST:     AAGTTCTAGGTTTGCATATGTGTGGAGACGATGCTCCTGAAATTGTGCAG                         GGGTTTGCAGTTGCTCTTAAAGCTCGCTTGACCAAGGCTGACTTTGATGCC
genomic: AAGTTCTAGGTTTGCATATGTGTGGAGACGATGCTCCTGAAATTGTGCAGgtttttagag ... tgatacccagGGGTTTGCAGTTGCTCTTAAAGCTCGCTTGACCAAGGCTGACTTTGATGCC
EST: gi|12496411|gb|BG047051.1|BG047051
EST:     AAGTTCTAGGTTTGCATATGTGTGGAGACGATGCTCCTGAAATTGTGCAG                         GGGTTTGCAGTTGCTCTTAAAGCTCGCTTGACCAAAGCTGACTTTGATGCC
genomic: AAGTTCTAGGTTTGCATATGTGTGGAGACGATGCTCCTGAAATTGTGCAGgtttttagag ... tgatacccagGGGTTTGCAGTTGCTCTTAAAGCTCGCTTGACCAAGGCTGACTTTGATGCC
EST: gi|16347393|gb|BI972988.1|BI972988
EST:     AAGTTCTAGGTTTGCATATGTGTGGAGACGATGCTCCTGAAATTGTGCAG                         GGGTTTGCAGTTGCTCTTAAAGCTCGCTTGACCAAGGCTGACTTTGATGCC
genomic: AAGTTCTAGGTTTGCATATGTGTGGAGACGATGCTCCTGAAATTGTGCAGgtttttagag ... tgatacccagGGGTTTGCAGTTGCTCTTAAAGCTCGCTTGACCAAGGCTGACTTTGATGCC
EST: gi|23064089|gb|BU578862.1|BU578862
EST:     AAGTTCTAGGTTTGCATATGTGTGGAGACGATGCTCCTGAAATTGTGCAG                         GGGTTTGCAGTTGCTCTTAAAGCTCGCTTGACCAAGGCTGACTTTGATGCC
genomic: AAGTTCTAGGTTTGCATATGTGTGGAGACGATGCTCCTGAAATTGTGCAGgtttttagag ... tgatacccagGGGTTTGCAGTTGCTCTTAAAGCTCGCTTGACCAAGGCTGACTTTGATGCC


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tgataatgatacatgagttttcaattcatttgttatacatctgcttgatacccagGGGTTTGCAGTTGCTCTTAAAGCTCGCTTGACCAAGGCTGACTTTGATGCCACTGTAGGCATTCACCCAAGTGCCGCTGAGGAATTTGTTACCATGAGGA
                                          gcttgat  putative branch site (score: 5)
                                       tctgctt  CT-rich tract
                      aattcatttgttata  TA-rich tract