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gtatcttgcttttaagtatgtttgattctgctatatttagaattcacatctgtgcaggaactaataatgaatttctatcgttgttagCCTCTATTCCCTGGTGAGAGTGGAGTAGATCAGCTTGTTGAAATTATCAAG
species | Glycine max |
transcript | GLYMA10G01280.1 |
intron # | 8 |
splice site | 3' |
intron type | U2 |
EST: TTGATATTTGGTCAGCTGGTTGTGTACTTGGTGAACTAATGCTTGGCCAG CCTCTATTCCCTGGTGAGAGTGGAGTAGATCAGCTTGTTGAAATTATCAAGEST: gi|151399753|gb|EV269624.1|EV269624
genomic: TTGATATTTGGTCAGCTGGTTGTGTACTTGGTGAACTAATGCTTGGCCAGgtatcttgct ... tcgttgttagCCTCTATTCCCTGGTGAGAGTGGAGTAGATCAGCTTGTTGAAATTATCAAG
EST: TGATATTTGGTCAGCTGGTTGTGTACTTTGGTGAACTAATGCTTGGCCAG CCTCTATTCCCTGGTGAGAGTGGAGTAGATCAGCTTGTTGAAATTATCAAGEST: gi|193328222|gb|FK294243.1|FK294243
genomic: TGATATTTGGTCAGCTGGTTGTGTACTT-GGTGAACTAATGCTTGGCCAGgtatcttgct ... tcgttgttagCCTCTATTCCCTGGTGAGAGTGGAGTAGATCAGCTTGTTGAAATTATCAAG
EST: TTGATATTTGGTCAGCTGGTTGTGTACTTGGTGAACTAATGCTTGGCCAG CCTCTATTCCCTGGTGAGAGTGGAGTAGATCAGCTTGTTGAAATTATCAAG
genomic: TTGATATTTGGTCAGCTGGTTGTGTACTTGGTGAACTAATGCTTGGCCAGgtatcttgct ... tcgttgttagCCTCTATTCCCTGGTGAGAGTGGAGTAGATCAGCTTGTTGAAATTATCAAG
atatttagaattcacatctgtgcaggaactaataatgaatttctatcgttgttagCCTCTATTCCCTGGTGAGAGTGGAGTAGATCAGCTTGTTGAAATTATCAAG
aactaat putative branch site (score: 2)
tttctatc putative PPT
taataatgaatttcta TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtatcttgcttttaagtatgtttgattctgctatatttagaattcacatctgtgcaggaactaataatgaatttctatcgttgttagCCTCTATTCCCTGGTGAGAGTGGAGTAGATCAGCTTGTTGAAATTATCAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGTGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GTGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGATCA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TCAGCT