Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   		6  
 5'  3'   		7  
 5'  3'   		8  
 5'  3'   		9  
 5'  3'   		10  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaagtgtttttgtaatctttttgatgaatcaatgaccaagttaggtcttgatgtttattctcatttttttatcagGACCTGGTGGAAAACAATCCCCTTATTGCAGTTGATGTTCTCACTAAGTTGATAAATTCTCCAGAAATAGCAGA

Basic information

species Glycine max
transcript GLYMA10G00610.2
intron # 8
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA10G00610.2 (Glycine max), 3'ss of exon 8
lower sequence: Vv07s0130g00310.t01 (Vitis vinifera), 3'ss of exon 8
--------gtaagtgtttttgtaatctttttgatgaatcaatgaccaagttaggtcttgatgtttattctcatttttttatcagGACCTGGTGGAAAACAATCCCCTTATTGCAGTTGATGTTCTCACTAAGTTGATAAATTCTCCAGAAATAGCAGA
         || |  | | |  | | ||| | |  | | ||    | ||||    |||||| || |    | | || ||||||||| |||||||||||||||||||||||||| ||||| ||||||| ||||||||| |||||  | ||||| |  ||
gtatgtgattatgcatgtgtaaattgtttcttaatattaaaatggctagttctaccttgatattcagagacctcttgttatcagGATCTGGTGGAAAACAATCCCCTTATTGCGGTTGAAGTTCTCATTAAGTTGATTAATTCAGCTGAAATTGAGGA
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|8403273|gb|BE058907.1|BE058907
EST:     ATGATCCAAAGCTTGTATATCACTGTGGACTGACACCAAGAAAGTTGCCA                         GACCTGGTGGAAAACAATCCCCTTATTGCAGTTGATGTTCTCACTAAGTTG
genomic: ATGATCCAAAGCTTGTATATCACTGTGGACTGACACCAAGAAAGTTGCCAgtaagtgttt ... tttttatcagGACCTGGTGGAAAACAATCCCCTTATTGCAGTTGATGTTCTCACTAAGTTG
EST: gi|21887209|gb|BQ740422.1|BQ740422
EST:     ATGATCCAAAGCTTGTATATCACTGTGGACTGACACCAAGAAAGTTGCCA                         GACCTGGTGGAAAACAATCCCCTTATTGCAGTTGATGT
genomic: ATGATCCAAAGCTTGTATATCACTGTGGACTGACACCAAGAAAGTTGCCAgtaagtgttt ... tttttatcagGACCTGGTGGAAAACAATCCCCTTATTGCAGTTGATGT


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

ttgatgaatcaatgaccaagttaggtcttgatgtttattctcatttttttatcagGACCTGGTGGAAAACAATCCCCTTATTGCAGTTGATGTTCTCACTAAGTTGATAAATTCTCCAGAAATAGCAGA
                         tcttgat  putative branch site (score: 4)
                                 tttattctcatttttt  CT-rich tract
                              atgtttattctcattt  TA-rich tract