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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtgacttaaacagtcttttaccataccagtgtgtatgtgcatgtctatatagatattcttttatatagatgatgaataatttgtgcttgcactgtacaacccggacatattttgtttgtgcagtgcatccctgactcagtaaataatataattaaactttgccttcattatcttatgtttgtgtcttcaacattgcagGATCCTTCGAAGCATGTGTTTCACCTTGTTACTGATAAACTAAATTTTGGAGCCATGAACATGTGGTTTTTGTTGAATCCTCCTGGAAAAGCTACAATCA

Basic information

species Glycine max
transcript GLYMA09G40260.1
intron # 8
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA09G40260.1 (Glycine max), 3'ss of exon 8
lower sequence: LOC_Os06g49810.1 (Oryza sativa), 3'ss of exon 7
gtgacttaaacagtcttttaccataccagtgtgtatgtgcatgtctatatagatattcttttatatagatgatgaataatttgtgcttgcactgtacaacccggacatattttgtttgtgcagtgcatccctgactcagtaaataatataattaaactttgccttcattatcttatgtttgtgtcttcaacattgcagGATCCTTCGAAGCATGTGTTTCACCTTGTTACTGATAAACTAAATTTTGGAGCCATGAACATGTGGTTTTTGTTGAATCCTCCTGGAAAAGCTACAATCA
                                                                                        | |  || ||| |  ||    ||   |||| | | ||||         || | | | |        ||   ||  |||  ||     || |  | | |  | ||| |||||| |||  ||| ||||| || || ||||||||||| || || || |||||||| |||||||||||||||||||||||||| |||||| | || |||||| 
----------------------------------------------------------------------------------------gtaa-gtgcaatctaga---gttcaatttg-gaattgcaatttcttggcaatgactga-------gaaacatgtattcggtaaaaactgctcatttttctaccat-gcagGAGCCTGAGAAACATGTATTCCATCTTGTTACTGACAAGCTGAACTTTGGAGCAATGAACATGTGGTTTTTGTTGAATCCACCTGGAGATGCGACAATCC

upper sequence: GLYMA09G40260.1 (Glycine max), 3'ss of exon 8
lower sequence: LOC_Os09g36180.1 (Oryza sativa), 3'ss of exon 8
gtgacttaaacagtcttttaccataccagtgtgtatgtgcatgtctatatagatattcttttatatagatgatgaataatttgtgcttgcactgtacaacccggacatattttgtttgtgcagtgcatccctgactcagtaaataatataattaaactttgccttcattatcttatgtttgtgtcttcaacattgcagGATCCTTCGAAGCATGTGTTTCACCTTGTTACTGATAAACTAAATTTTGGAGCCATGAACATGTGGTTTTTGTTGAATCCTCCTGGAAAAGCTACAATCA
                                                                                                               | ||||   |  | | |   | |   |||  | | | | || |    |||   | |        | | | || | | | | || ||||| |||  ||||||||| || || ||||| ||||||||  | || ||||||||||||||||||||||||||| |||| |||||||| || || || ||| 
--------------------------------------------------------------------------------------------------------------gtagtttcgtc--ttcctttttaatcaagtgcaaagtgtgataa----ttgttctaacagc----tatctatggcataatcttttcagGAGCCTGAGAAGCATGTTTTCCATCTTGTGACTGATAAGTTGAACTTTGGAGCCATGAACATGTGGTTTTTGCTGAACCCTCCTGGGAAGGCCACCATCC

upper sequence: GLYMA09G40260.1 (Glycine max), 3'ss of exon 8
lower sequence: LOC_Os09g36190.1 (Oryza sativa), 3'ss of exon 7
gtgacttaaacagtcttttaccataccagtgtgtatgtgcatgtctatatagatattcttttatatagatgatgaataatttgtgcttgcactgtacaacccggacatattttgtttgtgcagtgcatccctgactcagtaaataatataattaaactttgccttcattatcttatgtttgtgtcttcaacattgcagGATCCTTCGAAGCATGTGTTTCACCTTGTTACTGATAAACTAAATTTTGGAGCCATGAACATGTGGTTTTTGTTGAATCCTCCTGGAAAAGCTACAATCA
                                                                                                               | |||| ||   | | ||  | |   | |  | | | | || ||    |   |    |  |   | | | || | | | | || ||||| |||  ||||||||| || || ||||| ||||||||  | || ||||||||||||||||||||||||||| |||| || ||||| || || || ||| 
--------------------------------------------------------------------------------------------------------------gtagtttctgtcttcc-tctttaatcaaatgcaaactgtgat-aagtgataagtgttctgacaactatgtatggcataaccttttcagGAGCCTGAGAAGCATGTTTTCCATCTTGTGACTGATAAGTTGAACTTTGGAGCCATGAACATGTGGTTTTTGCTGAACCCACCTGGGAAGGCCACCATCC

upper sequence: GLYMA09G40260.1 (Glycine max), 3'ss of exon 8
lower sequence: GRMZM2G076276_T03 (Zea mays), 3'ss of exon 7
gtgacttaaacagtcttttaccataccagtgtgtatgtgcatgtctatatagatattcttttatatagatgatgaataatttgtgcttgcactgtacaacccggacatattttgtttgtgcagtgcatccctgactcagtaaataatataattaaactttgccttcattatcttatgtttgtgtcttcaacattgcagGATCCTTCGAAGCATGTGTTTCACCTTGTTACTGATAAACTAAATTTTGGAGCCATGAACATGTGGTTTTTGTTGAATCCTCCTGGAAAAGCTACAATCA
                                                                            || | |   |   ||   |  |||  | |    | |  | | | || |   ||    | | | | |   ||   ||   |||||    | ||| ||||         |||  ||  || ||||| |||   || ||||||||||||||||||||||| ||||| || ||||| ||||||||||||||||||||| ||||||| |||||  | || |||||  
--------------------------------------------------------------------------gttagtgtaatccc-catcttgaaactggaa---gtgtaatctcttcattatgtctaccattgaatgacccattatatagcacttt----tgattttctt---------tctataaattttcagGAGCCTGAAAAACATGTGTTTCACCTTGTTACTGACAAACTGAACTTTGGGGCCATGAACATGTGGTTTTTGCTGAATCCACCTGGGGATGCAACAATGC

upper sequence: GLYMA09G40260.1 (Glycine max), 3'ss of exon 8
lower sequence: GRMZM2G147145_T02 (Zea mays), 3'ss of exon 4
gtgacttaaacagtcttttaccataccagtgtgtatgtgcatgtctatatagatattcttttatatagatgatgaataatttgtgcttgcactgtacaacccggacatattttgtttgtgcagtgcatccctgactcagtaaataatataattaaactttgccttcattatcttatgtttgtgtcttcaacattgcagGATCCTTCGAAGCATGTGTTTCACCTTGTTACTGATAAACTAAATTTTGGAGCCATGAACATGTGGTTTTTGTTGAATCCTCCTGGAAAAGCTACAATCA
                                                                            || |||     ||||   | ||| | ||| ||||  | | |     ||   | ||  | | | |    |||   |||| |||             ||||| ||| |  ||  ||  |||||||| |||   || ||||| ||||| ||||||||||| ||||| || ||||| ||||||||||||||||||||| ||||||| |||||  | || |||||| 
--------------------------------------------------------------------------gttagtttaa---tgcatctt-caagctggaaatatgatctcttcattgtttgtacc--attgactggtcaattatattacact-------------cttatttttcttgctataaatttgcagGAGCCTGAAAAACATGTATTTCATCTTGTTACTGACAAACTGAACTTTGGGGCCATGAACATGTGGTTTTTGCTGAATCCACCTGGGGATGCAACAATCC

upper sequence: GLYMA09G40260.1 (Glycine max), 3'ss of exon 8
lower sequence: GRMZM2G379577_T01 (Zea mays), 3'ss of exon 7
gtgacttaaacagtcttttaccataccagtgtgtatgtgcatgtctatatagatattcttttatatagatgatgaataatttgtgcttgcactgtacaacccggacatattttgtttgtgcagtgcatccctgactcagtaaataatataattaaactttgccttcattatcttatgtttgtgtcttcaacattgcagGATCCTTCGAAGCATGTGTTTCACCTTGTTACTGATAAACTAAATTTTGGAGCCATGAACATGTGGTTTTTGTTGAATCCTCCTGGAAAAGCTACAATCA
                                                                                                           ||||||   ||  |  |   ||  | | |||    ||   ||   | ||  | |     |  || | |||||||     ||  | || ||| | ||   ||| ||||| || || ||||| ||||| ||  |||| |||||||||||||||||||||||| || |||| || ||||| || ||||| ||| 
----------------------------------------------------------------------------------------------------------gtattttccatgcacttttagtcaattattca----attgcattcctcaaagtagttcctaacat-tgatgtttggaatgtc--cttttcagAAACCAGAGAAACATGTTTTCCATCTTGTGACTGACAAGTTAAACTTTGGAGCCATGAACATGTGGTTTCTGCTGAACCCACCTGGCAAGGCTACCATCC

upper sequence: GLYMA09G40260.1 (Glycine max), 3'ss of exon 8
lower sequence: GRMZM2G386971_T01 (Zea mays), 3'ss of exon 7
gtgacttaaacagtcttttaccataccagtgtgtatgtgcatgtctatatagatattcttttatatagatgatgaataatttgtgcttgcactgtacaacccggacatattttgtttgtgcagtgcatccctgactcagtaaataatataattaaactttgccttcattatcttatgtttgtgtcttcaacattgcagGATCCTTCGAAGCATGTGTTTCACCTTGTTACTGATAAACTAAATTTTGGAGCCATGAACATGTGGTTTTTGTTGAATCCTCCTGGAAAAGCTACAATCA
                                                                                                           |||||||  ||| |  |   ||  | | ||| |     |    | |||   | |  |  | |   | |||||||     ||    || ||||| ||   ||| ||||| || || ||||| ||||| ||  |||| |||||||||||||||||||||||| || |||| || ||||| || || || ||| 
----------------------------------------------------------------------------------------------------------gtattttgcgtgtacttttagtcaattattcaattgc--actccactaag--tagtttctaatgg-tgatgtttggcatgtc--tttttcagGAACCAGAGAAACATGTTTTCCATCTTGTGACTGACAAGTTAAACTTTGGAGCCATGAACATGTGGTTTCTGCTGAACCCACCTGGCAAGGCCACCATCC

upper sequence: GLYMA09G40260.1 (Glycine max), 3'ss of exon 8
lower sequence: Vv15s0048g01300.t01 (Vitis vinifera), 3'ss of exon 8
gtgacttaaacagtcttttaccataccagtgtgtatgtgcatgtctatatagatattcttttatatagatgatgaataatttgtgcttgcactgtacaacccggacatattttgtttgtgcagtgcatccctgactcagtaaataatataattaaactttgccttcattatcttatgtttgtgtcttcaacattgcagGATCCTTCGAAGCATGTGTTTCACCTTGTTACTGATAAACTAAATTTTGGAGCCATGAACATGTGGTTTTTGTTGAATCCTCCTGGAAAAGCTACAATCA
                                                                                            || | || |   |     |||||| |   ||  ||     |  |||  | ||  | |   |    ||| | |||| ||  || || |  |  | || |  |||||||| ||    || ||||| || || || ||||||||||| || ||||||||||||||||| ||||||||| ||||||| || || |||||||| || ||| 
------------------------------------------------------------------------------------------tttggataagcgaaaggggatttgttaggaaagcacaaaagggcatca-catatgttcttcct----ttttcattcactaagtt-tgctaataccctcga--ttgcagGAACCAGAAAAACATGTATTCCATCTGGTTACTGATAAGCTGAATTTTGGAGCCATGAATATGTGGTTTCTGTTGAACCCCCCAGGAAAAGCAACTATCC

upper sequence: GLYMA09G40260.1 (Glycine max), 3'ss of exon 8
lower sequence: PP1S507_8V6.2 (Physcomitrella patens), 3'ss of exon 8
gtgacttaaacagtcttttaccataccagtgtgtatgtgcatgtctatatagatattcttttatatagatgatgaataatttgtgcttgcactgtacaacccggacatattttgtttgtgcagtgcatccctgactcagtaaataatataattaaactttgccttcattatcttatgtttgtgtcttcaacattgcagGATCCTTCGAAGCATGTGTTTCACCTTGTTACTGATAAACTAAATTTTGGAGCCATGAACATGTGGTTTTTGTTGAATCCTCCTGGAAAAGCTACAATCA
                                                                                                                                               |   ||   |    | |  ||  |   || || |||  | ||  |    | |||||| ||    ||||| ||||||||| |||| ||||| || ||||||| ||| || ||||| ||||||||||||   || | ||||||  | || || ||  
-------------------------------------------------------------------------------------------------nnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnntttcatg-ctgtgttgttactgaaggctcgtaagttaatttcacctgtctcgcagGAACCAGAAAAGCACGTGTTTCACATTGTCACTGACAAGCTAAATTATGGTGCTATGAAGATGTGGTTTTTGGCAAACCTTCCTGGCGATGCCACCATTG


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

taatataattaaactttgccttcattatcttatgtttgtgtcttcaacattgcagGATCCTTCGAAGCATGTGTTTCACCTTGTTACTGATAAACTAAATTTTGGAGCCATGAACATGTGGTTTTTGTTGAATCCTCCTGGAAAAGCTACAATCA
                       attatcttatgttt  TA-rich tract