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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gttaagaaatctgacaatcagaccaaagaagggacatgtaacccaatgacagGAGACACTGTTTGGGTTGAGGGTCTTGTCCCTGGCATTGACTTTTGTAACCATG

Basic information

species Glycine max
transcript GLYMA09G39970.1
intron # 8
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA09G39970.1 (Glycine max), 3'ss of exon 8
lower sequence: AT1G01920.1 (Arabidopsis thaliana), 3'ss of exon 7
-----------------------------------------------------------------------------------gttaagaaatctgacaatcagaccaaagaagggacatgtaacccaatgacagGAGACACTGTTTGGGTTGAGGGTCTTGTCCCTGGCATTGACTTTTGTAACCATG
                                                                                    |          || | |||| |  ||   | | ||| |     |    | ||||| ||  | ||||||||||| ||||| ||||||||||||||||| |||||||
gtctgctgaattctgtgtgaaatgcctcttttttaattattattattctatcatgtaacgacaatttcatgggtttcttcattttctgatgggtagaaattcagGCTCAACCTGCGCCATCTG---TAGGATCCGGAGATACAATATGGGTTGAGGGGCTTGTTCCTGGCATTGACTTTTGCAACCATG

upper sequence: GLYMA09G39970.1 (Glycine max), 3'ss of exon 8
lower sequence: AT1G01920.2 (Arabidopsis thaliana), 3'ss of exon 7
----------------------------------------------------------------------------------------------------gttaagaaatctgacaatcagaccaaagaagggacatgtaacccaatgacagGAGACACTGTTTGGGTTGAGGGTCTTGTCCCTGGCATTGACTTTTGTAACCATG
                                                                                                     |          || | |||| |  ||   | | ||| |     |    | ||||| ||  | ||||||||||| ||||| ||||||||||||||||| |||||||
gcaagtcattaacgtcggtctgctgaattctgtgtgaaatgcctcttttttaattattattattctatcatgtaacgacaatttcatgggtttcttcattttctgatgggtagAAATTCAGGCTCAACCTGCGCCATCTG---TAGGATCCGGAGATACAATATGGGTTGAGGGGCTTGTTCCTGGCATTGACTTTTGCAACCATG

upper sequence: GLYMA09G39970.1 (Glycine max), 3'ss of exon 8
lower sequence: Vv04s0043g00790.t01 (Vitis vinifera), 3'ss of exon 7
-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------gttaagaaatctgacaatcagaccaaagaagggacatgtaacccaatgacagGAGACACTGTTTGGGTTGAGGGTCTTGTCCCTGGCATTGACTTTTGTAACCATG
                                                                                                                                                                             ||| |    | ||| |  ||   |||   |||||| |      |||||  || ||| |   | |||||||||||||||||||||||||||||              
gtgagattcttgttccttcttcgtcatttttccatgagatttctttttttcatctctacaattattttttcaatataaggtttgtaggatgcatgattcttctttttttttgtcctttttaataggtaatgtgtcttctgagatggctacctttttcttttttagGCACTGATGTTCATGGGTTTGAAAGCCAAGTCAACAGAGGGACTTCCTCTTCAATGCAAGAAGAAATCCTCTGGGTTGAGGGTCTTGTCCCTGGCATTGA--------------


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

gttaagaaatctgacaatcagaccaaagaagggacatgtaacccaatgacagGAGACACTGTTTGGGTTGAGGGTCTTGTCCCTGGCATTGACTTTTGTAACCATG
                                      atgtaac  putative branch site (score: 3)
        taagaaat  TA-rich tract