1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' |
...atataggtaattaaccacttagttgaatgctaatctgtttattttcttttctttactattttgaggagaagatgattaccgtgttcatttgcttttatagATGATTTTCCCATGGATGTTTGATGAGATTCATGCATTGAAACCTTTCAAAGAGGCAGCTCATATATTGGCAGAGAAGAAGGACTGGCCCCCACTATATG
species | Glycine max |
transcript | GLYMA09G39020.1 |
intron # | 8 |
splice site | 3' |
intron type | U2 |
EST: ATGCAATTAGAGCTGCCAGAGAAAGACTCCCTGTACTTTTTACAGGAGAG ATGATTTTCCCATGGATGTTTGATGAGATTCATGCATTGAAACCTTTCAAAEST: gi|22933761|gb|BU550900.1|BU550900
genomic: ATGCAATTAGAGCTGCCAGAGAAAGACTCCCTGTACTTTTTACAGGAGAGgtagggtgta ... gcttttatagATGATTTTCCCATGGATGTTTGATGAGATTCATGCATTGAAACCTTTCAAA
EST: ATGCAATTAGAGCTGCCAGAGAAAGACTCCCTGTACTTTTTACAGGAGAG ATGATTTTCCCATGGATGTTTGATGAGATTCATGCATTGAAACCTTTCAAA
genomic: ATGCAATTAGAGCTGCCAGAGAAAGACTCCCTGTACTTTTTACAGGAGAGgtagggtgta ... gcttttatagATGATTTTCCCATGGATGTTTGATGAGATTCATGCATTGAAACCTTTCAAA
cttttctttactattttgaggagaagatgattaccgtgttcatttgcttttatagATGATTTTCCCATGGATGTTTGATGAGATTCATGCATTGAAACCTTTCAAAGAGGCAGCTCATATATTGGCAGAGAAGAAGGACTGGCCCCCACTATATG
tttgctttt CT-rich tract
tttactatttt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| atataggtaattaaccacttagttgaatgctaatctgtttattttcttttctttactattttgaggagaagatgattaccgtgttcatttgcttttatagATGATTTTCCCATGGATGTTTGATGAGATTCATGCATTGAAACCTTTCAAAGAGGCAGCTCATATATTGGCAGAGAAGAAGGACTGGCCCCCACTATATG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CAGCTC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCTCA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAG
- - - - - - - ccactta
- - - - - - - - - - - - gaatgct
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - taccgtg