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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaaggctaaattggaaatttcagaataagtgtaacacatggatcatatctaaagcatgcttgaccgaattttacagGAGCGCAAAGGCAGGTTTTTATGCTTCTAGGTACAAGAGATTTGGCAACCTGTGCTATATCATTGGTGCATTGCAAGCCTTCATCGGGCATCAAAACCAG

Basic information

species Glycine max
transcript GLYMA09G39010.1
intron # 8
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA09G39010.1 (Glycine max), 3'ss of exon 8
lower sequence: LOC_Os03g03400.2 (Oryza sativa), 3'ss of exon 8
gtaaggctaaattggaaatttcagaataagtgtaacaca-tggatcatatctaaagcatg--cttgaccgaattttacagGAGCGCAAAGGCAGGTTTTTATGCTTCTAGGTACAAGAGATTTGGCAACCTGTGCTATATCATTGGTGCATTGCAAGCCTTCATCGGGCATCAAAACCAG
||||| | |   |||    ||     |  ||| ||  || |||||  | |  |||| |     |||  |      | |||||| || ||||| |||| || | |||||| ||||||||||||||||||| | |||||| |  |||| ||  |   ||||||    || |||   || |  
gtaagtcaagcatggctcatttgacct--gtgaaattcaatggatggtttgaaaaggaaaaaattgctctgcacctgcagGAGTGCTAAGGCGGGTTATTTTTCTTCTATGTACAAGAGATTTGGCAACTTATGCTATGTTTTTGGAGCGCTCAGAGCCTTTTGGGGACATAGTAATCGA

upper sequence: GLYMA09G39010.1 (Glycine max), 3'ss of exon 8
lower sequence: AT2G46090.1 (Arabidopsis thaliana), 3'ss of exon 8
gtaaggctaaattggaaatttcaga--ataagtg--------taacacatggat-catatctaaagcatgcttgaccgaattttacagGAGCGCAAAGGCAGGTTTTTATGCTTCTAGGTACAAGAGATTTGGCAACCTGTGCTATATCATTGGTGCATTGCAAGCCTTCATCGGGCATCAAAACCAG
|||||  ||   |||||||||       | | ||        | |  || || |  | ||||      |  |||  |     || |||||||||||||||||| ||||| ||||| |  ||||||| |||||| ||| |||||||  | ||||||||  | ||||| ||||| || ||||| ||||| 
gtaagcatatcgtggaaattttcatctgtgattgatccctaatgatgcaaggttgtaaatctgtccttttgttgctcattacttgcagGAGCGCAAAGGCAGGATTTTACGCTTCAAAATACAAGAAATTTGGAAACTTGTGCTACGTAATTGGTGCCCTACAAGCGTTCATGGGCCATCATAACCAA

upper sequence: GLYMA09G39010.1 (Glycine max), 3'ss of exon 8
lower sequence: Vv15s0046g01770.t01 (Vitis vinifera), 3'ss of exon 8
-----------------gtaaggctaaatt-----ggaaatttcagaat------------aagtgta-acacatggatcatatctaa--agcatgcttgaccgaattttacagGAGCGCAAAGGCAGGTTTTTATGCTTCTAGGTACAAGAGATTTGGCAACCTGTGCTATATCATTGGTGCATTGCAAGCCTTCATCGGGCATCAAAACCAG
                 |||||| ||| ||     |  ||||||||||             |||  || ||   |    || |||  |     || ||     |||||||  ||||| ||||||||||| | ||| |||||||| ||||| |||||||| ||  |||| ||| |||||||||||||||||||||| || || ||||| ||||||
gtaaggttaattcatttgtaaggttaacttcctcagagaatttcagaactgacctttgtggaagcatatactggtctgacaaatcccattgttattctctctggaattttttagGAGTGCAAAGGCAGGCTATTACGCTTCTAGATACAAAAGATTTGGAAATTTGTGTTATGTCATTGGTGCATTGCAAGCCTTTATTGGACATCAGAACCAG

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|7691359|gb|AW759417.1|AW759417
EST:     GGAGAGAGTTGTGATCATCATTACTTCATAAATGTCGCTGACATTCATTT                         GAGCGCAAAGGCAGGTTTTTATGCTTCTAGGTACAAGAGATTTGGCAACCT
genomic: GGAGAGAGTTGTGATCATCATTACTTCATAAATGTCGCTGACATTCATTTgtaaggctaa ... aattttacagGAGCGCAAAGGCAGGTTTTTATGCTTCTAGGTACAAGAGATTTGGCAACCT






















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

agaataagtgtaacacatggatcatatctaaagcatgcttgaccgaattttacagGAGCGCAAAGGCAGGTTTTTATGCTTCTAGGTACAAGAGATTTGGCAACCTGTGCTATATCATTGGTGCATTGCAAGCCTTCATCGGGCATCAAAACCAG
                       atatctaaa  TA-rich tract