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...tgatattttttttcctgagaatttatggcttatttagttgtattataatatataactatagtgattcttatacctcttttactcatatataacaattcagACTGATCAGAAGCTACGTGTGTGCGACATTTGTGGAGCATTTTTGAGTGTTTATGACAG
species | Glycine max |
transcript | GLYMA09G38430.1 |
intron # | 8 |
splice site | 3' |
intron type | U2 |
EST: AGGAGCCAGTGTTGGATTCTTCAAAGTATACAGCTGTGGATGTGCGGATT ACTGATCAGAAGCTACGTGTGTGCGACATTTGTGGAGCANTTTTGAGTGTGEST: gi|254336538|gb|GR842717.1|GR842717
genomic: AGGAGCCAGTGTTGGATTCTTCAAAGTATACAGCTGTGGATGTGCGGATTgtgagtagat ... aacaattcagACTGATCAGAAGCTACGTGTGTGCGACATTTGTGGAGCATTTTTGAGTGTT
EST: AGGAGCCAGTGTTGGATTCTTCAAAGTATACAGCTGTGGATGTGCGGATT ACTGATCAGAAGCTACGTGTGTGCGACATTTGTGGAGCATTTTTGAGTGTTEST: gi|254336539|gb|GR842718.1|GR842718
genomic: AGGAGCCAGTGTTGGATTCTTCAAAGTATACAGCTGTGGATGTGCGGATTgtgagtagat ... aacaattcagACTGATCAGAAGCTACGTGTGTGCGACATTTGTGGAGCATTTTTGAGTGTT
EST: TCAAAGTATACAGCTGTGGATGTGCGGA-T ACTGATCAGAAGCTACGTGTGTGCGACATTTGTGGAGCATTTTTGAGTGTTEST: gi|208146329|gb|GD946208.1|GD946208
genomic: TCAAAGTATACAGCTGTGGATGTGCGGATTgtgagtagat ... aacaattcagACTGATCAGAAGCTACGTGTGTGCGACATTTGTGGAGCATTTTTGAGTGTT
EST: GATTCTTCAAAGTATACAGCTGTGGATGTGCGGATT ACTGATCAGAAGCTACGTGTGTGCGACATTTGTGGAGCATTTTTGAGTGTTEST: gi|16343424|gb|BI969019.1|BI969019
genomic: GATTCTTCAAAGTATACAGCTGTGGATGTGCGGATTgtgagtagat ... aacaattcagACTGATCAGAAGCTACGTGTGTGCGACATTTGTGGAGCATTTTTGAGTGTT
EST: AGCCAGTGTTGGATTCTTCAAAGTATACAGCTGTGGATGTGCGGATT ACTGATCAGAAGCTACGTGTGTGCGACATTTGTGGAGCATTNNNGAGTGTT
genomic: AGCCAGTGTTGGATTCTTCAAAGTATACAGCTGTGGATGTGCGGATTgtgagtagat ... aacaattcagACTGATCAGAAGCTACGTGTGTGCGACATTTGTGGAGCATTTTTGAGTGTT
taatatataactatagtgattcttatacctcttttactcatatataacaattcagACTGATCAGAAGCTACGTGTGTGCGACATTTGTGGAGCATTTTTGAGTGTTTATGACAG
atataac putative branch site (score: 3)
ttttactcatatataa TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| tgatattttttttcctgagaatttatggcttatttagttgtattataatatataactatagtgattcttatacctcttttactcatatataacaattcagACTGATCAGAAGCTACGTGTGTGCGACATTTGTGGAGCATTTTTGAGTGTTTATGACAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GTGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGCA
- - - - - tttcctg