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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtttgctggttactcttgcttaatttcagtagttcaataattatggctaatatctaagctttctattgtccctcatcactctaataatggtggttggcagATGATTTTGATGATTTCTGCTCCCAAGCTTCGAAGCTCGCAGAAGAATCAAATGGTGCACCATTGTTTACTGTAACTCAGTCTCGGAGTTTCTCAAAGCA

Basic information

species Glycine max
transcript GLYMA09G38000.1
intron # 8
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA09G38000.1 (Glycine max), 3'ss of exon 8
lower sequence: Vv00s0215g00030.t01 (Vitis vinifera), 3'ss of exon 9
gtttgctggttact----cttgcttaatttcagtagttcaataattatggctaatatctaagctttctattgtccctcatcactctaataatggtggttggcagATGATTTTGATGATTTCTGCTCCCAAGCTTCGAAGCTCGCAGAAGAATCAAATGGTGCACCATTGTTTACTGTAACTCAGTCTCGGAGTTTCTCAAAGCA
||||| |||||  |     |||  | | |   ||  ||   |  |  ||    | |||  |||||| |||||    |  |   |||  |     | |||||||||||||||||||||||| ||   ||  ||||| ||||| |||||  |||||||||| || ||| | ||||||||| ||||    |  |||||  |||||| 
gtttgttggttcttgctctttggctgaatatggtgattt--tggtggtgaaatacatcagagcttt-tattgattatagtttttcttttctgtattgttggcagATGATTTTGATGATTTTTGTATCCGGGCTTCCAAGCTAGCAGATAAATCAAATGGAGCTCCACTATTTACTGTAGCTCACATCCACAGTTTGCCAAAGCC
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|13482239|gb|BG511582.1|BG511582
EST:     AGATTCAATTGATCCATCCTTAGCTATTGGATTTTACTGCCGAGACAAAG                         ATGATTTTGATGATTTCTGCTCCCAAGCTTCGAAGCTCGCAGAAGAATTTA
genomic: AGATTCAATTGATCCATCCTTAGCTATTGGATTTTACTGCCGAGACAAAGgtttgctggt ... tggttggcagATGATTTTGATGATTTCTGCTCCCAAGCTTCGAAGCTCGCAGAAGAATCAA






















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

gctaatatctaagctttctattgtccctcatcactctaataatggtggttggcagATGATTTTGATGATTTCTGCTCCCAAGCTTCGAAGCTCGCAGAAGAATCAAATGGTGCACCATTGTTTACTGTAACTCAGTCTCGGAGTTTCTCAAAGCA
                                 ctctaat  putative branch site (score: 3)
                                  tctaataat  TA-rich tract