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...ataccattttatcattttacagattcaatatgtaaatattttcatgattgagtcctgtatctgatgtgacttggctttaattacatactactattggcagGTGAAGCGGGTCTACTATCCAGGCTTGCCGAGTCACCCTGAACATGAGCTTGCCAAGAGGCAGATGACTGGTTTCGGTGGTGTTGTCAGTTTTGAG
species | Glycine max |
transcript | GLYMA09G37020.1 |
intron # | 8 |
splice site | 3' |
intron type | U2 |
EST: AGAATTCAACAGGAATGAGGATGGCCAAACTTTTAGAGGCACATCCCAAG GTGAAGCGGGTCTACTATCCAGGCTTGCCGAGTCACCCTGAACATGAGCTTEST: gi|9204521|gb|BE330745.1|BE330745
genomic: AGAATTCAACAGGAATGAGGATGGCCAAACTTTTAGAGGCACATCCCAAGgtatcatggc ... ctattggcagGTGAAGCGGGTCTACTATCCAGGCTTGCCGAGTCACCCTGAACATGAGCTT
EST: ACAGGAATGAGGATGGCCATACTTTTAGAGGCACATCCCAAG GTGAAGCGGGTCTACTATCCAGGCTTGCCGAGTCACCCTGAACATGAGCTTEST: gi|5666752|gb|AI930788.1|AI930788
genomic: ACAGGAATGAGGATGGCCAAACTTTTAGAGGCACATCCCAAGgtatcatggc ... ctattggcagGTGAAGCGGGTCTACTATCCAGGCTTGCCGAGTCACCCTGAACATGAGCTT
EST: CTTTTAGAGGCACATCCCAAG GTGAAGCGGGTCTACTATCCAGGCTTGCCGAGTCACCCTGAACATGAGCTTEST: gi|151406835|gb|EV276650.1|EV276650
genomic: CTTTTAGAGGCACATCCCAAGgtatcatggc ... ctattggcagGTGAAGCGGGTCTACTATCCAGGCTTGCCGAGTCACCCTGAACATGAGCTT
EST: AGAATTCAACAGGAATGAGGATGGCCAAACTTTTAGAGGCACATCCCAAG GTGAAGCGGGTCTACTATCCAGGCTTGCCGAGTCACCCTGAACATGAGCTTEST: gi|17153398|gb|BM143331.1|BM143331
genomic: AGAATTCAACAGGAATGAGGATGGCCAAACTTTTAGAGGCACATCCCAAGgtatcatggc ... ctattggcagGTGAAGCGGGTCTACTATCCAGGCTTGCCGAGTCACCCTGAACATGAGCTT
EST: AGAATTCAACAGGAATGAGGATGGCCGAACTTTTAGAGGCACATCCCAAG GTGAAGCGGGTCTACTATCCAGGCTTGCCGAGTCATCCTGAACATGAGCTTEST: gi|16346611|gb|BI972206.1|BI972206
genomic: AGAATTCAACAGGAATGAGGATGGCCAAACTTTTAGAGGCACATCCCAAGgtatcatggc ... ctattggcagGTGAAGCGGGTCTACTATCCAGGCTTGCCGAGTCACCCTGAACATGAGCTT
EST: AGAATTCAACAGGAATGAGGATGGCCGAACTTTTAGAGGCACATCCCAAG GTGAAGCGGGTCTACTATCCAGGCTTGCCGAGTCATCCTGAACATGAGCTTEST: gi|18712556|gb|BM522662.1|BM522662
genomic: AGAATTCAACAGGAATGAGGATGGCCAAACTTTTAGAGGCACATCCCAAGgtatcatggc ... ctattggcagGTGAAGCGGGTCTACTATCCAGGCTTGCCGAGTCACCCTGAACATGAGCTT
EST: AGAATTCAACAGGAATGAGGATGGCCAAACTTTTAGAGGCACATCCCAAG GTGAAGCGGGTCTACTATCCAGGCTTGCCGAGTCACCCTGAACATGAGCTTEST: gi|12691080|gb|BG157416.1|BG157416
genomic: AGAATTCAACAGGAATGAGGATGGCCAAACTTTTAGAGGCACATCCCAAGgtatcatggc ... ctattggcagGTGAAGCGGGTCTACTATCCAGGCTTGCCGAGTCACCCTGAACATGAGCTT
EST: ACAGGAATGAGGATGGCCAAACTTTTAGAGGCACATCCCAAG GTGAAGCGGGTCTACTATCCAGGCTTGCCGAGTCACCCTGAACATGAGCTTEST: gi|13790160|gb|BG652751.1|BG652751
genomic: ACAGGAATGAGGATGGCCAAACTTTTAGAGGCACATCCCAAGgtatcatggc ... ctattggcagGTGAAGCGGGTCTACTATCCAGGCTTGCCGAGTCACCCTGAACATGAGCTT
EST: AGAATTCAACAGGAATGAGGATGGCCAAACTTTTAGAGGCACATCCCAAG GTGAAGCGGGTCTACTATCCAGGCTTGCCGAGTCACCCTGAACATGAGCTTEST: gi|18720947|gb|BM523284.1|BM523284
genomic: AGAATTCAACAGGAATGAGGATGGCCAAACTTTTAGAGGCACATCCCAAGgtatcatggc ... ctattggcagGTGAAGCGGGTCTACTATCCAGGCTTGCCGAGTCACCCTGAACATGAGCTT
EST: AGAATTCAACAGGAATGAGGATGGCCGAACTTTTAGAGGCACATCCCAAG GTGAAGCGGGTCTACTATCCAGGCTTGCCGAGTCATCCTGAACATGAGCTTEST: gi|305377733|gb|HO651964.1|HO651964
genomic: AGAATTCAACAGGAATGAGGATGGCCAAACTTTTAGAGGCACATCCCAAGgtatcatggc ... ctattggcagGTGAAGCGGGTCTACTATCCAGGCTTGCCGAGTCACCCTGAACATGAGCTT
EST: AGAATTCAACAGGAATGAGGATGGCCAAACTTTTAGAGGCACATCCCAAG GTGAAGCGGGTCTACTATCCAGGCTTGCCGAGTCACCCTGAACATGAGCTTEST: gi|254313664|gb|GR831293.1|GR831293
genomic: AGAATTCAACAGGAATGAGGATGGCCAAACTTTTAGAGGCACATCCCAAGgtatcatggc ... ctattggcagGTGAAGCGGGTCTACTATCCAGGCTTGCCGAGTCACCCTGAACATGAGCTT
EST: AGAATTCAACAGGAATGAGGATGGCCAAACTTTTAGAGGCACATCCCAAG GTGAAGCGGGTCTACTATCCAGGCTTGCCGAGTCACCCTGAACATGAGCTTEST: gi|254343669|gb|GR857425.1|GR857425
genomic: AGAATTCAACAGGAATGAGGATGGCCAAACTTTTAGAGGCACATCCCAAGgtatcatggc ... ctattggcagGTGAAGCGGGTCTACTATCCAGGCTTGCCGAGTCACCCTGAACATGAGCTT
EST: AGAATTCAACAGGAATGAGGATGGCCGAACTTTTAGAGGCACATCCCAAG GTGAAGCGGGTCTACTATCCAGGCTTGCCGAGTCATCCTGAACATGAGCTTEST: gi|6914460|gb|AW395990.1|AW395990
genomic: AGAATTCAACAGGAATGAGGATGGCCAAACTTTTAGAGGCACATCCCAAGgtatcatggc ... ctattggcagGTGAAGCGGGTCTACTATCCAGGCTTGCCGAGTCACCCTGAACATGAGCTT
EST: AGAGGCACATCCCAAG GTGAAGCGGGTCTACTATCCAGGCTTGCCGAGTCACCCTGAACATGAGCTTEST: gi|17023490|gb|BM094524.1|BM094524
genomic: AGAGGCACATCCCAAGgtatcatggc ... ctattggcagGTGAAGCGGGTCTACTATCCAGGCTTGCCGAGTCACCCTGAACATGAGCTT
EST: AGAATTCAACAGGAATGAGGATGGCCAAACTTTTAGAGGCACATCCCAAG GTGAAGCGGGTCTACTATCCAGGCTTGCCGAGTCACCCTGAACATGAGCTTEST: gi|9899860|gb|BE608828.1|BE608828
genomic: AGAATTCAACAGGAATGAGGATGGCCAAACTTTTAGAGGCACATCCCAAGgtatcatggc ... ctattggcagGTGAAGCGGGTCTACTATCCAGGCTTGCCGAGTCACCCTGAACATGAGCTT
EST: AGAATTCAACAGGAATGAGGATGGCCGAACTTTTAGAGGCACATCCCAAG GTGAAGCGGGTCTACTATCCAGGCTTGCCGAGTCATCCTGAACATGAGCTTEST: gi|12688526|gb|BG154862.1|BG154862
genomic: AGAATTCAACAGGAATGAGGATGGCCAAACTTTTAGAGGCACATCCCAAGgtatcatggc ... ctattggcagGTGAAGCGGGTCTACTATCCAGGCTTGCCGAGTCACCCTGAACATGAGCTT
EST: ACAGGAATGAGGATGGCCAAACTTTTAGAGGCACATCCCAAG GTGAAGCGGGTCTACTATCCAGGCTTGCCGAGTCACCCTGAACATGAGCTT
genomic: ACAGGAATGAGGATGGCCAAACTTTTAGAGGCACATCCCAAGgtatcatggc ... ctattggcagGTGAAGCGGGTCTACTATCCAGGCTTGCCGAGTCACCCTGAACATGAGCTT
gattgagtcctgtatctgatgtgacttggctttaattacatactactattggcagGTGAAGCGGGTCTACTATCCAGGCTTGCCGAGTCACCCTGAACATGAGCTTGCCAAGAGGCAGATGACTGGTTTCGGTGGTGTTGTCAGTTTTGAG
ctttaat putative branch site (score: 4)
tttaattacatacta TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| ataccattttatcattttacagattcaatatgtaaatattttcatgattgagtcctgtatctgatgtgacttggctttaattacatactactattggcagGTGAAGCGGGTCTACTATCCAGGCTTGCCGAGTCACCCTGAACATGAGCTTGCCAAGAGGCAGATGACTGGTTTCGGTGGTGTTGTCAGTTTTGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCAGAT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CAGATG
- - - - - - - - - - - - - - - - - - - - ttcatga
- - - - - - - - - - - - - - - - - - - - - - - - - - tcctgta
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - -tctgatg
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - tgacttg
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -tacatac