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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtacccttcctttcctttctatcctatctatttccactttagcttatgttgtgttctaaacaaaaaaacaaccactaatgttttcgctcttttcatttgaaagatactttgcgaaactttcattcaaggaagatctaaaatattcaagtctgatttttcttttccttttattagGGCTCTGCTAGGAATTTGCCTCAATCGTGCACTTCAAGACTTAGCCCAAGGCTG

Basic information

species Glycine max
transcript GLYMA09G35050.4
intron # 8
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|10709683|gb|BF009407.1|BF009407
EST:     TGGGAGAACAACACATTGAACAGTACTTCAGTCAAGTTGTTGCCACACAT                         GGCTCTGCTAGGAATTTGCCTCAATCGTGCACTTCAAGACTTAGCCCAAGG
genomic: TGGGAGAACAACACATTGAACAGTACTTCAGTCAAGTTGTTGCCACACATgtacccttcc ... cttttattagGGCTCTGCTAGGAATTTGCCTCAATCGTGCACTTCAAGACTTAGCCCAAGG
EST: gi|9898765|gb|BE607733.1|BE607733
EST:     TGNGAGAACAACACATTGAACAGTACTTCAGTCAAGTTGTTGCCACACAT                         GGCTCTGCTAG-AATTTGCCTCAATCGTGCACTTCAAGACTTAGCCCCAAG
genomic: TGGGAGAACAACACATTGAACAGTACTTCAGTCAAGTTGTTGCCACACATgtacccttcc ... cttttattagGGCTCTGCTAGGAATTTGCCTCAATCGTGCACTTCAAGACTTAGCCC-AAG
EST: gi|37995321|gb|CF806910.1|CF806910
EST:     TGGGAGAACAACACATTGAACAGTACTTCAGTCAAGTTGTTGCCACACAT                         GGCTCTGCTAGGAATTTGCCTCAATCGTGCACTTCAAGACTTAGCCCAAGG
genomic: TGGGAGAACAACACATTGAACAGTACTTCAGTCAAGTTGTTGCCACACATgtacccttcc ... cttttattagGGCTCTGCTAGGAATTTGCCTCAATCGTGCACTTCAAGACTTAGCCCAAGG
EST: gi|7589608|gb|AW705379.1|AW705379
EST:     TGGGAGAACAACACATTGAACAGTACTTCAGTCAAGTTGTTGCCACACAT                         GGCTCTGCTAGGAATTTGCCTCAATCGTGCACTTCAAGACTTAGCCCAAGG
genomic: TGGGAGAACAACACATTGAACAGTACTTCAGTCAAGTTGTTGCCACACATgtacccttcc ... cttttattagGGCTCTGCTAGGAATTTGCCTCAATCGTGCACTTCAAGACTTAGCCCAAGG
EST: gi|33389751|gb|CA852958.1|CA852958
EST:     TGGGAGAACAACACATTGAACAGTACTTCAGTCAAGTTGTTGCCACACAT                         GGCTCTGCTAGGAATTTGCCTCAATCGTGCACTTCAAGACTTAGCCCAAGG
genomic: TGGGAGAACAACACATTGAACAGTACTTCAGTCAAGTTGTTGCCACACATgtacccttcc ... cttttattagGGCTCTGCTAGGAATTTGCCTCAATCGTGCACTTCAAGACTTAGCCCAAGG


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tcattcaaggaagatctaaaatattcaagtctgatttttcttttccttttattagGGCTCTGCTAGGAATTTGCCTCAATCGTGCACTTCAAGACTTAGCCCAAGGCTG
                             tctgatttttcttttc  CT-rich tract
                                 atttttcttttccttt  TA-rich tract