1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' |
...agtaacaaatgtgaaatttattttgcaattgttgtcttgagtgattattcttgggatggttccagagaaaacttgatgattatttgttctgatattgcagATACATCACTCCTGAATATCTTGGATATTTGGATCTCCTACGAAACTTAAGAATAGGAGATTGCTCCTGACTCAAAGCATCATGACCATTTACTATGTTG
species | Glycine max |
transcript | GLYMA09G31960.1 |
intron # | 8 |
splice site | 3' |
intron type | U2 |
EST: TTCAAGCCGAATTGCTCTCTTGTAATCATTGACTTCCTGTTTCGACATGG ATACATCACTCCTGAATATCTTGGATATTTGGATCTCCTACGAAACTTAAGEST: gi|7285875|gb|AW598362.1|AW598362
genomic: TTCAAGCCGAATTGCTCTCTTGTAATCATTGACTTCCTGTTTCGACATGGgtatttctct ... gatattgcagATACATCACTCCTGAATATCTTGGATATTTGGATCTCCTACGAAACTTAAG
EST: TTCAAGCCGAATTGCTCTCTTGTAATCATTGACTTCCTGTTTCGACATGG ATACATCACTCCTGAATATCTTGGATATTTGGATCTCCTACGAAACTTAAGEST: gi|19268704|gb|BM884960.1|BM884960
genomic: TTCAAGCCGAATTGCTCTCTTGTAATCATTGACTTCCTGTTTCGACATGGgtatttctct ... gatattgcagATACATCACTCCTGAATATCTTGGATATTTGGATCTCCTACGAAACTTAAG
EST: TTCAAGCCGAATTGCTCTCTTGTAATCATTGACTTCCTGTTTCGACATGG ATACATCACTCCTGAATATCTTGGATATTTGGATCTCCTACGAAACTTAAG
genomic: TTCAAGCCGAATTGCTCTCTTGTAATCATTGACTTCCTGTTTCGACATGGgtatttctct ... gatattgcagATACATCACTCCTGAATATCTTGGATATTTGGATCTCCTACGAAACTTAAG
tattcttgggatggttccagagaaaacttgatgattatttgttctgatattgcagATACATCACTCCTGAATATCTTGGATATTTGGATCTCCTACGAAACTTAAGAATAGGAGATTGCTCCTGACTCAAAGCATCATGACCATTTACTATGTTG
ttctgat putative branch site (score: 3)
atgattattt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| agtaacaaatgtgaaatttattttgcaattgttgtcttgagtgattattcttgggatggttccagagaaaacttgatgattatttgttctgatattgcagATACATCACTCCTGAATATCTTGGATATTTGGATCTCCTACGAAACTTAAGAATAGGAGATTGCTCCTGACTCAAAGCATCATGACCATTTACTATGTTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGGAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGAT
-gtaacaaa
- - - - - - - - - - ttttgca
- - - - - - - - - - - - - - -tgttgtc
- - - - - - - - - - - - - - - - - - -tgagtga
- - - - - - - - - - - - - - - - - - - - - - - - - - gggatgg
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -agagaaaa
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -cttgatg