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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gttgtgacatgtttaactcaattgtcttatctgatgttgtcaccttagaaacgtttttaacactgtcttctgtttggcttagTGGGATGTTCTTTCCAATGGCAATGCTGTGCAAGAGGTTGCTCATATAGCAAATGGTCCACACCCTGGTAACTGCATATCTGTGCTTCGA

Basic information

species Glycine max
transcript GLYMA09G29810.1
intron # 8
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA09G29810.1 (Glycine max), 3'ss of exon 8
lower sequence: AT1G17920.1 (Arabidopsis thaliana), 3'ss of exon 8
----------gttgtgacatgtttaactcaatt-gtcttatctgatgttgtcaccttagaaacgtttttaacactgtcttctgtttggctt---agTGGGATGTTCTTTCCAATGGCAATGCTGTGCAAGAGGTTGCTCATATAGCAAATGGTCCACACCCTGGTAACTGCATATCTGTGCTTCGA
          |   | ||||    |    ||   |  |||| || |||| | |  |||   ||     | ||| | ||||   ||||| ||   ||||||| |||||||| ||||| ||  |||| ||||| |||||||||||  |||| ||  || | ||||| |||||||||||||| ||||| 
gtactacacagacttaacattgccatagaaaccagaattatttggtgtt-taa--ttaatcacccgagtgacattttctttgttttggttttatagTGGGACGTTCTTTCAAATGGAAACTCTGTTCAAGAAGTTGCTCATATCACAAACGGATCAAATCCTGGAAACTGCATATCTGTTCTTCGT

upper sequence: GLYMA09G29810.1 (Glycine max), 3'ss of exon 8
lower sequence: AT1G73360.1 (Arabidopsis thaliana), 3'ss of exon 8
gttgtgaca-tgtttaactcaattgtcttatctgatgttgtcaccttagaaacgtttttaacactgtcttctgtttggc----ttagTGGGATGTTCTTTCCAATGGCAATGCTGTGCAAGAGGTTGCTCATATAGCAAATGGTCCACACCCTGGTAACTGCATATCTGTGCTTCGA
||    |||       | ||||     | ||  ||     |||  ||   || || | ||    |  |||||  || |      ||||||||||||||||| || || || || |||||||| |||||||| ||  |||| ||  |||| ||||| ||||||||||| || || || 
gtaacaacaacacaagattcaaaatcttcatacgaaagattcat-ttgataatgtatatattgtttccttcttgtttgtgatactagTGGGATGTTCTTTCAAACGGAAACGCAGTGCAAGAAGTTGCTCACATCTCAAACGGATCACATCCTGGAAACTGCATATCGGTTCTACGT

upper sequence: GLYMA09G29810.1 (Glycine max), 3'ss of exon 8
lower sequence: Vv17s0053g00780.t01 (Vitis vinifera), 3'ss of exon 8
gttgtgacatgtttaactcaattgtcttatctgatgttgtcaccttagaaacgtttttaacactgtcttctgtttggcttagTGGGATGTTCTTTCCAATGGCAATGCTGTGCAAGAGGTTGCTCATATAGCAAATGGTCCACACCCTGGTAACTGCATATCTGTGCTTCGA
||     |||| || | | |  |  || ||  ||   |       |   | | ||  |||||     |  | ||   |  ||||||||||||| |||||||||||||| |||||||||||||| ||||| |||||||| ||||| |||||||||||||||||||| ||  | 
gtatatgcatgattgaattatata-ctaattggaaactactgttatgatatctttagtaacatgtgttaattttcttcacagTGGGATGTTCTCTCCAATGGCAATGCCGTGCAAGAGGTTGCCCATATTGCAAATGGGCCACATCCTGGTAACTGCATATCTGTCCTGAGG


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tatctgatgttgtcaccttagaaacgtttttaacactgtcttctgtttggcttagTGGGATGTTCTTTCCAATGGCAATGCTGTGCAAGAGGTTGCTCATATAGCAAATGGTCCACACCCTGGTAACTGCATATCTGTGCTTCGA
                           ttttaac  putative branch site (score: 2)
                                      tcttctgttt  putative PPT
                          tttttaaca  TA-rich tract