1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' |
...aattgctccttaatccatttgagcaatgttttcatgtttgtcttcaaactcaagggctctttaagtcaagaaacattaattatgagtctaatctttgcagATATGAGCTCTGTTTTACTGGAGAAAAGATGGCGAAGGCTATACCAGCAACTCAGATGCATGACCTAGATACAGAGAAGTCTCAAAATCACCATCACCAT
species | Glycine max |
transcript | GLYMA09G28530.1 |
intron # | 8 |
splice site | 3' |
intron type | U2 |
EST: TGGAGACACACTCCTGCAG ATATGAGCTCTGTTTTACTGGAGAAAAGATGGCGAAGGCTATACCAGCAACEST: gi|254330469|gb|GR841734.1|GR841734
genomic: TGGAGACACACTCCTGCAGgtattttcta ... atctttgcagATATGAGCTCTGTTTTACTGGAGAAAAGATGGCGAAGGCTATACCAGCAAC
EST: GCTCGTTTAAAGAAGGGAGAAGTTCTTTATCTGGAGACACACTCCTGCAG ATATGAGCTCTGTTTTACTGGAGAAAAGATGGCGAAGGCTATACCAGCAAC
genomic: GCTCGTTTAAAGAAGGGAGAAGTTCTTTATCTGGAGACACACTCCTGCAGgtattttcta ... atctttgcagATATGAGCTCTGTTTTACTGGAGAAAAGATGGCGAAGGCTATACCAGCAAC
aaactcaagggctctttaagtcaagaaacattaattatgagtctaatctttgcagATATGAGCTCTGTTTTACTGGAGAAAAGATGGCGAAGGCTATACCAGCAACTCAGATGCATGACCTAGATACAGAGAAGTCTCAAAATCACCATCACCAT
gtctaat putative branch site (score: 3)
tctttgc CT-rich tract
aagaaacattaattat TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| aattgctccttaatccatttgagcaatgttttcatgtttgtcttcaaactcaagggctctttaagtcaagaaacattaattatgagtctaatctttgcagATATGAGCTCTGTTTTACTGGAGAAAAGATGGCGAAGGCTATACCAGCAACTCAGATGCATGACCTAGATACAGAGAAGTCTCAAAATCACCATCACCAT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CAGATG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAAGT
- -tgctcct
- - - - - - - ccatttg
- - - - - - - - - - - -caatgtt
- - - - - - - - - - - - - - - - - tgtttgt
- - - - - - - - - - - - - - - - - - - - - -tcaaact
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -aagaaaca