Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   		6  
 5'  3'   		7  
 5'  3'   		8  
 5'  3'   		9  
 5'  3'   		10  
 5'  3'   		11  
 5'  3'   		12  
 5'  3'   		13  
 5'  3'   		14  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gttggttgaccattatccggcatgaaaatctgcttactgattattttccttataaagtataaagcccaatagttggtctgtcaattgacagGGCACAACTTGACAATGCTTCCCATGGAACCCAAACTTGGCAAGATGCTTATATTTGGTGTTATCTTCAATTGCCTGGATCCCATATTAACTATTGTTGC

Basic information

species Glycine max
transcript GLYMA09G18490.1
intron # 8
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA09G18490.1 (Glycine max), 3'ss of exon 8
lower sequence: LOC_Os01g02884.1 (Oryza sativa), 3'ss of exon 7
---gttggttgaccatt---atccggcatgaaaatctgctt-actga-ttattttc----cttataaagtataa-agcccaatagttggtctgtcaattgacagGGCACAACTTGACAATGCTTCCCATGGAACCCAAACTTGGCAAGATGCTTATATTTGGTGTTATCTTCAATTGCCTGGATCCCATATTAACTATTGTTGC
      | |  | | ||   |||   | |  |   |||||| | ||| | || ||      || ||   | |   | |   |     ||  || || ||  ||||  |  ||||  | ||||||||  | || || ||| | || |||||||| || ||||||| ||| || |||||||| |||||||||||||| |||||| |
gtatcagatccatccttcaaatcatccgtttatcactgctttattgaatcatcttgagcatttgtagcatgtgctaactatacccacggattggca-ttaccagGAAAGCACTTATCCATGCTTCCAGTTGAGCCTAAATTGGGGAAGATGCTGATTTTTGGTGCTATTTTTAATTGCCTTGATCCCATATTAACCATTGTTTC

upper sequence: GLYMA09G18490.1 (Glycine max), 3'ss of exon 8
lower sequence: GRMZM2G373175_T02 (Zea mays), 3'ss of exon 13
---gttggttgacc------atta---tccggcatgaaaatctgcttactgattattttc----cttataaagtataaagcccaatagt-----tggtctgtcaattgacagGGCACAACTTGACAATGCTTCCCATGGAACCCAAACTTGGCAAGATGCTTATATTTGGTGTTATCTTCAATTGCCTGGATCCCATATTAACTATTGTTGC
     || || |||      ||||   |    ||| | |      |||||    || |      ||| |  ||  |     |  ||| |       |  ||||| ||  ||||  |  ||||| | ||||||||  | ||||| ||  | || ||||||||||| ||||| | ||| || ||||| ||||||||||||||||| || ||| |
gtacctgattcacccataagattaaatttttacataacagctgctttactccgcatctctgtagcttttgtagcttgtgtgctgataatgcttactgcttgtcatttt-cagGAAAGCACTTGTCTATGCTTCCAGTTGAACCTAAGTTAGGAAAGATGCTTATTTTTGGGGCTATTTTTAATTGTCTGGATCCCATATTAACCATAGTTTC

upper sequence: GLYMA09G18490.1 (Glycine max), 3'ss of exon 8
lower sequence: Vv01s0011g04360.t01 (Vitis vinifera), 3'ss of exon 13
---------gttggttgaccattatccggcatgaaaatctgcttactgattattttccttataaagtataaagcccaatagttggtctgtcaa--ttgacagGGCACAACTTGACAATGCTTCCCATGGAACCCAAACTTGGCAAGATGCTTATATTTGGTGTTATCTTCAATTGCCTGGATCCCATATTAACTATTGTTGC
         |||| ||     ||  |             |||| |    | ||      |||||  | |  |  ||    ||         ||  ||| |||| | | |||||||||||||||| ||||| || |||||||| |||||||||||| | || | | ||||||||||||| ||||| ||| |||| || |||||
gtgtgtaaagttgtttccatgtttcctaatgcattctggtgctcataactgatgcaatgtataactttttcattcctcatgtcctctaactaacattggcagGCCGCCACTTGACAATGCTTCCAATGGAGCCTAAACTTGGAAAGATGCTTATACTGGGGGCTGTCTTCAATTGCCTAGATCCAATACTAACCATCGTTGC


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

ctgattattttccttataaagtataaagcccaatagttggtctgtcaattgacagGGCACAACTTGACAATGCTTCCCATGGAACCCAAACTTGGCAAGATGCTTATATTTGGTGTTATCTTCAATTGCCTGGATCCCATATTAACTATTGTTGC
     tattttccttataaag  TA-rich tract