1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' |
...gcttgaaatggattcaattattcgtgtataagtatcaagatatttctaagtaggtaacaaaaaatatatatgtacaccttttctaactctcgtcttgcagGAATCCTAGGAGGCCAGGATATGACACTCATCCAGATTGGCAACATTTTCGGAGAGATGCTGATTCAGACTACATATAGTCGTAATACGGACAAGTTGTC
species | Glycine max |
transcript | GLYMA09G06650.1 |
intron # | 8 |
splice site | 3' |
intron type | U2 |
EST: CCATATGGACCTCCCGGTGTTCCTGGTTTTGAACCCAACAGATTTGCAAG GAATCCTAGGAGGCCAGGATATGACACTCATCCAGATTGGCAACATTTTCGEST: gi|7795266|gb|AW780663.1|AW780663
genomic: CCATATGGACCTCCCGGTGTTCCTGGTTTTGAACCCAACAGATTTGCAAGgtatggtgca ... cgtcttgcagGAATCCTAGGAGGCCAGGATATGACACTCATCCAGATTGGCAACATTTTCG
EST: CCATATGGACCTCCCGGTGTTCCTGGTTTTGAACCCAACAGATTTGCAAG GAATCCTAGGAGGCCAGGATATGACACTCATCCAGATTGGCAACATTTTCGEST: gi|254333555|gb|GR848473.1|GR848473
genomic: CCATATGGACCTCCCGGTGTTCCTGGTTTTGAACCCAACAGATTTGCAAGgtatggtgca ... cgtcttgcagGAATCCTAGGAGGCCAGGATATGACACTCATCCAGATTGGCAACATTTTCG
EST: CCACATGGACCTCCCGGTGTTCCTGGTTTTGAACCCAACAGATTTGCAAG GAATCCTAGGAGGCCAGGATATGACACTCATCCAGATTGGCAACATTTTCGEST: gi|22929152|gb|BU546291.1|BU546291
genomic: CCATATGGACCTCCCGGTGTTCCTGGTTTTGAACCCAACAGATTTGCAAGgtatggtgca ... cgtcttgcagGAATCCTAGGAGGCCAGGATATGACACTCATCCAGATTGGCAACATTTTCG
EST: CCATATGGACCTCCCGGTGTTCCTGGTTTTGAACCCAACAGATTTGCAAG GAATCCTAGGAGGCCAGGATATGACACTCATCCAGATTGGCAACATTTTCGEST: gi|209726446|gb|BW662811.1|BW662811
genomic: CCATATGGACCTCCCGGTGTTCCTGGTTTTGAACCCAACAGATTTGCAAGgtatggtgca ... cgtcttgcagGAATCCTAGGAGGCCAGGATATGACACTCATCCAGATTGGCAACATTTTCG
EST: CCATATGGACCTCCCGGTGTTCCTGGTTTTGAACCCAACAGATTTGCAAG GAATCCTAGGAGGCCAGGATATGACACTCATCCAGATTTGCAACATTTTCGEST: gi|22928233|gb|BU545372.1|BU545372
genomic: CCATATGGACCTCCCGGTGTTCCTGGTTTTGAACCCAACAGATTTGCAAGgtatggtgca ... cgtcttgcagGAATCCTAGGAGGCCAGGATATGACACTCATCCAGATTGGCAACATTTTCG
EST: CCATATGGACCTCCCGGTGTTCCTGGTTTTGAACCCAACAGATTTGCAAG GAATCCTAGGAGGCCAGGATATGACACTCATCCAGATTGGCAACATTTTCG
genomic: CCATATGGACCTCCCGGTGTTCCTGGTTTTGAACCCAACAGATTTGCAAGgtatggtgca ... cgtcttgcagGAATCCTAGGAGGCCAGGATATGACACTCATCCAGATTGGCAACATTTTCG
ctaagtaggtaacaaaaaatatatatgtacaccttttctaactctcgtcttgcagGAATCCTAGGAGGCCAGGATATGACACTCATCCAGATTGGCAACATTTTCGGAGAGATGCTGATTCAGACTACATATAGTCGTAATACGGACAAGTTGTC
ttctaac putative branch site (score: 1)
ccttttctaactctc CT-rich tract
taacaaaaaatatata TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gcttgaaatggattcaattattcgtgtataagtatcaagatatttctaagtaggtaacaaaaaatatatatgtacaccttttctaactctcgtcttgcagGAATCCTAGGAGGCCAGGATATGACACTCATCCAGATTGGCAACATTTTCGGAGAGATGCTGATTCAGACTACATATAGTCGTAATACGGACAAGTTGTC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGATG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - ATGCTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGAT
gcttgaa
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - aaaaaat
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - tatgtac