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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaatgggacccaaaattagcaattggcaagacagttaattatttgagatattgcactgatatcaagtctgcattgatcttcgcagGGGTACTGATGAAGAGTCAAGGTCTAAAAGAATGCACATTTATGTTTCTTTACTAAAACAAATGGCCCCTGAGCATCTTCTAGCAACCTTTGCCAAGTTA

Basic information

species Glycine max
transcript GLYMA09G04940.1
intron # 8
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA09G04940.1 (Glycine max), 3'ss of exon 8
lower sequence: LOC_Os12g36170.1 (Oryza sativa), 3'ss of exon 6
------------------------------gtaatgggacccaaaattagcaattggcaagacagttaattatttgagatattgcactgatatcaagtctgcattgatcttc-----gcagGGGTACTGATGAAGAGTCAAGGTCTAAAAGAATGCACATTTATGTTTCTTTACTAAAACAAATGGCCCCTGAGCATCTTCTAGCAACCTTTGCCAAGTTA
                               | |    |   || ||   || || |||| |   |    |   |    |  ||   |  ||||| |  |   ||  ||||      |||| || ||||| |||  ||| ||||| |||||||||||||| ||||| ||| | || || |||||||| || ||||| ||| |||| || | ||||||||||
gtaaaatatgtagaaattcctcatgcgtttttgagaaaaaaaaagatatccactttgcaaaaagctgtgcttcatcctctcctgagttc-tatcatggttatttttttctttttgctgcagAGGCACTGACGAAAGGTCGAGGTCGAAAAGAATGCACATATATGTATCTCTGCTGAAGCAAATGGCACCAGAGCACCTTTTAGCTACGTCTGCCAAGTTA

upper sequence: GLYMA09G04940.1 (Glycine max), 3'ss of exon 8
lower sequence: GRMZM2G571844_T01 (Zea mays), 3'ss of exon 5
gtaatgggacccaaaat-----tagcaat--tggcaagacagttaattatttgagatattgcactgatatcaagtctgcattgatcttcgcagGGGTACTGATGAAGAGTCAAGGTCTAAAAGAATGCACATTTATGTTTCTTTACTAAAACAAATGGCCCCTGAGCATCTTCTAGCAACCTTTGCCAAGTTA
||||    || |||| |     |   | |  | |||||| || |  ||  ||   |  ||    |  | |        ||||  | || |||| || |||||||||    | ||||| || ||||||||||||||||| ||||| || ||||||||||| || ||||||||| |||| || |  |||||||||
gtaaaacaactcaaactgttcttcttagtccttgcaagagagatgcttcattcctagcttaattttttttatcacgctcattcttttttgcagTGGCACTGATGAAAGCACGAGGTCAAAGAGAATGCACATTTATGTCTCTTTGCTGAAACAAATGGCACCAGAGCATCTTTTAGCCACGTCGGCCAAGTTA

upper sequence: GLYMA09G04940.1 (Glycine max), 3'ss of exon 8
lower sequence: AT4G15890.1 (Arabidopsis thaliana), 3'ss of exon 8
--------------gtaatgggacccaaaattagcaattggcaagacagttaattatttgagatattgcactgat-atcaagtctgcattgatcttcgcagGGGTACTGATGAAGAGTCAAGGTCTAAAAGAATGCACATTTATGTTTCTTTACTAAAACAAATGGCCCCTGAGCATCTTCTAGCAACCTTTGCCAAGTTA
              || ||     | |   | |        |  |||| ||  |  | |||   ||   | |||| |||     | ||||  |  | | || || | |||||||  | | ||||||||||||||||| || || ||| |||| || |||||||||||||| || || ||| | || || || |||||||||
gtacttgtgttaaagttatatagtctatgctcatacgcaaacttgacattt--tggtgtgaatgatcttagtgattatctttgtttcatttgttct-gtagAGGGAATGATGAAAGGGCTAGGTCTAAAAGAATGCAGATCTACGTTACTTTGCTTAAACAAATGGCCCCAGAACACCTTTTGGCCACATTCGCCAAGTTA

upper sequence: GLYMA09G04940.1 (Glycine max), 3'ss of exon 8
lower sequence: Vv05s0020g01160.t01 (Vitis vinifera), 3'ss of exon 7
-gtaatgggacccaaaattagcaattggcaagacagttaattatttgagatattgcactgatat---caagtctgcattgatcttcgcagGGGTACTGATGAAGAGTCAAGGTCTAAAAGAATGCACATTTATGTTTCTTTACTAAAACAAATGGCCCCTGAGCATCTTCTAGCAACCTTTGCCAAGTTA
   | |      || | | ||  | | | || |||| |||  ||| || | ||   |   ||||    | |  |   ||    ||  ||| |||| ||||||| ||||||| ||||||||||||||||| ||||||| ||| || |||||||||||||| ||||| ||| |||| || ||||| ||| ||
gtcagtaaatttcagattcagtgactaggaaaacagctaaa-attggaaagatccaatgtatatgtatatgatttttttttcttttccagAGGTAATGATGAAAAGTCAAGATCTAAAAGAATGCACATCTATGTTTGTTTGCTGAAACAAATGGCCCCAGAGCACCTTTTAGCTACTTTTGCTAAGCTA


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

acagttaattatttgagatattgcactgatatcaagtctgcattgatcttcgcagGGGTACTGATGAAGAGTCAAGGTCTAAAAGAATGCACATTTATGTTTCTTTACTAAAACAAATGGCCCCTGAGCATCTTCTAGCAACCTTTGCCAAGTTA
                                              tcttcgc  CT-rich tract
     taattatttgagatat  TA-rich tract