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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtttatatttgatgtagctagaaacatcatctttcatggagGAGTTTGGTTTGCCCACAAAAACAAGAACCAAGGACGGATACAACCCACTCTTGGATGACTTCAAGAATACCAAATTTTATCTTAGCGTCCCTACACACA

Basic information

species Glycine max
transcript GLYMA09G03240.1
intron # 8
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA09G03240.1 (Glycine max), 3'ss of exon 8
lower sequence: AT1G04900.1 (Arabidopsis thaliana), 3'ss of exon 12
--------------------------------------------------------------------------gtttatatttgat-gtagctagaaacatcatctttcatggagGAGTTTGGTTTGCCCACAAAAACAAGAACCAAGGACGGATACAACCCACTCTTGGATGACTTCAAGAATACCAAATTTTATCTTAGCGTCCCTACACACA
                                                                          |||   ||||| | |||||| || |||||| | |||||||| ||||||||||| ||  |||| || ||||| ||||||||||| |||||  |  | |||||||||||||| || || |                        
gtaaatcaagattctctttaaacattttaacaagagaggatatttctgatgcttttcatcaacagtcttttcttgttctcatttgcttgtagCTTGATACATCAGCGTTCATGGATGAGTTTGGTTTACCTTCAAAGACGAGAACAAAGGACGGATATAACCCCTTACTTGATGACTTCAAGAACACTAAGT------------------------

upper sequence: GLYMA09G03240.1 (Glycine max), 3'ss of exon 8
lower sequence: Vv05s0136g00320.t01 (Vitis vinifera), 3'ss of exon 2
-----------------------------------------------------------------------------------gtttatatttgatgtagctagaaacatcatctttcatggagGAGTTTGGTTTGCCCACAAAAACAAGAACCAAGGACGGATACAACCCACTCTTGGATGACTTCAAGAATACCAAATTTTATCTTAGCGTCCCTACACACA
                                                                                    | || ||| ||||||||| || || || || ||||||||||| |||||  ||||| ||||||| |||||||| || ||||||||||||||  |||||||||||||||| || ||||                        
ttttctatagatttgagtctcgtctatacatatttttagtttcacaattttattctaactttctttgcattcttgtcaaatatatataaattggatgtagCTTGATACGTCCTCATTCATGGAGGAATTTGGCCTGCCCTCAAAAACGAGAACCAAAGATGGATACAACCCACTGCTGGATGACTTCAAGAACACTAAAT------------------------


















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

gtttatatttgatgtagctagaaacatcatctttcatggagGAGTTTGGTTTGCCCACAAAAACAAGAACCAAGGACGGATACAACCCACTCTTGGATGACTTCAAGAATACCAAATTTTATCTTAGCGTCCCTACACACA
                    atttgat  putative branch site (score: 5)
                                        tcatctttc  putative PPT
               tttatatttgatgta  TA-rich tract