1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' |
...gcattgtggatgcctgctgctagtgttggaaaatatgattcaatgtctattggtaaatgacataaaggataatatgaatttgttctctttctgtctgcagCATACTTCATTGAGCCCTGATGGAAAACTACTTGCTGTTGTTGGAGACAACCCAAAAGGGTTACTGGTGGATTCTCAAACAGGAAAG
species | Glycine max |
transcript | GLYMA09G02070.1 |
intron # | 8 |
splice site | 3' |
intron type | U2 |
EST: CTTTCCTTGGCCAGTAAAT CATACTTCATTGAGCCCTGATGGAAAACTACTTGCTGTTGTTGGAGACAACEST: gi|193462992|gb|FK427757.1|FK427757
genomic: CTTTCCTTGGCCAGTAAATgtaagtattt ... ctgtctgcagCATACTTCATTGAGCCCTGATGGAAAACTACTTGCTGTTGTTGGAGACAAC
EST: TTGAGAGATTTCAGCTTTCAAAGCATTTCTGCTTTCCTTGGCCAGTAAAT CATACTTCATTGAGCCCTGATGGAAAACTACTTGCTGTTGTTGGAGACAACEST: gi|193477489|gb|FK441442.1|FK441442
genomic: TTGAGAGATTTCAGCTTTCAAAGCATTTCTGCTTTCCTTGGCCAGTAAATgtaagtattt ... ctgtctgcagCATACTTCATTGAGCCCTGATGGAAAACTACTTGCTGTTGTTGGAGACAAC
EST: TTGAGAGATTTCAGCTTTCAAAGCATTTCTGCTTTCCTTGGCCAGTAAAT CATACTTCATTGAGCCCTGATGGAAAACTACTTGCTGTTGTTGGAGACAACEST: gi|193491917|gb|FK456511.1|FK456511
genomic: TTGAGAGATTTCAGCTTTCAAAGCATTTCTGCTTTCCTTGGCCAGTAAATgtaagtattt ... ctgtctgcagCATACTTCATTGAGCCCTGATGGAAAACTACTTGCTGTTGTTGGAGACAAC
EST: TTGAGAGATTTCAGCTTTCAAAGCATTTCTGCTTTCCTTGGCCAGTAAAT CATACTTCATTGAGCCCTGATGGAAAACTACTTGCTGTTGTTGGAGACAACEST: gi|193661345|gb|FK604371.1|FK604371
genomic: TTGAGAGATTTCAGCTTTCAAAGCATTTCTGCTTTCCTTGGCCAGTAAATgtaagtattt ... ctgtctgcagCATACTTCATTGAGCCCTGATGGAAAACTACTTGCTGTTGTTGGAGACAAC
EST: TTGAGAGATTTCNGCTTTCAAAGCATTTCTGCTTTCCTTGGCCAGTAAAT CATACTTCATTGAGCCCTGATGGAAAACTACTTGCTGTTGTTGGAGACAAC
genomic: TTGAGAGATTTCAGCTTTCAAAGCATTTCTGCTTTCCTTGGCCAGTAAATgtaagtattt ... ctgtctgcagCATACTTCATTGAGCCCTGATGGAAAACTACTTGCTGTTGTTGGAGACAAC
tctattggtaaatgacataaaggataatatgaatttgttctctttctgtctgcagCATACTTCATTGAGCCCTGATGGAAAACTACTTGCTGTTGTTGGAGACAACCCAAAAGGGTTACTGGTGGATTCTCAAACAGGAAAG
tttgttctctttctgt CT-rich tract
ataatatgaatttgtt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gcattgtggatgcctgctgctagtgttggaaaatatgattcaatgtctattggtaaatgacataaaggataatatgaatttgttctctttctgtctgcagCATACTTCATTGAGCCCTGATGGAAAACTACTTGCTGTTGTTGGAGACAACCCAAAAGGGTTACTGGTGGATTCTCAAACAGGAAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TTGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGTGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGTGGA
- - - -ggatgcc
- - - - - - - tgctgct
- - - - - - - - - - - gtgttgg
- - - - - - - - - - - - - - - - - - - - caatgtc