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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaatactttgttataggtttgacctcttggctttctttagagatcatttagactctagaatgctgtattataacctatcttttttctctttccttttcccctctcattttagGATGATTATTTGGATTGCTTTGGTGATCCTCAAACAATTGGAAAG

Basic information

species Glycine max
transcript GLYMA09G01820.3
intron # 8
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|193566982|gb|FK525083.1|FK525083
EST:     TTGATGTAAAGAACATTCTTGTTGAGATGGGAACATACTTTCAAGTACAG                         GATGATTATTTGGA
genomic: TTGATGTAAAGAACATTCTTGTTGAGATGGGAACATACTTTCAAGTACAGgtaatacttt ... ctcattttagGATGATTATTTGGA
EST: gi|192325137|gb|FK017523.1|FK017523
EST:     TTGATGTAAAGAACATTCTTGTTGAGATGGGAACATACTTTCAAGTACAG                         GATGATTTATTTGGATTGCTTTGGTGATCCTCAAACAATTGGAAAG
genomic: TTGATGTAAAGAACATTCTTGTTGAGATGGGAACATACTTTCAAGTACAGgtaatacttt ... ctcattttagGATGATT-ATTTGGATTGCTTTGGTGATCCTCAAACAATTGGAAAG
EST: gi|19269348|gb|BM885604.1|BM885604
EST:     TTGATGTAAAGAACATTCTTGTTGAGATGGGAACATACTTTCAAGTACAG                         GATGATTATTTGGATTGCTTTGGTGATCCTCAAACAATTGG--A-
genomic: TTGATGTAAAGAACATTCTTGTTGAGATGGGAACATACTTTCAAGTACAGgtaatacttt ... ctcattttagGATGATTATTTGGATTGCTTTGGTGATCCTCAAACAATTGGAAAG
EST: gi|193491608|gb|FK454242.1|FK454242
EST:     TTGATGTAAAGAACATTCTTGTTGAGATGGGAACATACTTTCAAGTACAG                         GATGATTATTTGGATTGCTTTGGTGATCCTCAAACAATTGGAAAG
genomic: TTGATGTAAAGAACATTCTTGTTGAGATGGGAACATACTTTCAAGTACAGgtaatacttt ... ctcattttagGATGATTATTTGGATTGCTTTGGTGATCCTCAAACAATTGGAAAG
EST: gi|7028813|gb|AW458596.1|AW458596
EST:     TTGATGTAAAGAACATTCTTGTTGAGATGGGAACATACTTTCAAGTACAG                         GATGATTATTTGGATTGCTTTGGTGATCCTCAAACAATTGGAGAG
genomic: TTGATGTAAAGAACATTCTTGTTGAGATGGGAACATACTTTCAAGTACAGgtaatacttt ... ctcattttagGATGATTATTTGGATTGCTTTGGTGATCCTCAAACAATTGGAAAG
EST: gi|7284732|gb|AW597282.1|AW597282
EST:     TTGATGTAAAGAACATTCTTGTTGAGATGGGAACATACTTTCAAGTACAG                         GATGATTATTTGGATTGCTTTGGTGATCCTCAAACAATTGGAAAG
genomic: TTGATGTAAAGAACATTCTTGTTGAGATGGGAACATACTTTCAAGTACAGgtaatacttt ... ctcattttagGATGATTATTTGGATTGCTTTGGTGATCCTCAAACAATTGGAAAG
EST: gi|12774645|gb|BG239572.1|BG239572
EST:     TTGATGTAAAGAACATTCTTGTTGAGATGGGAACATACTTTCAAGTACAG                         GATGATTATTTGGATTGCTCTGGTGATCCTCAAACAATTGGAAAG
genomic: TTGATGTAAAGAACATTCTTGTTGAGATGGGAACATACTTTCAAGTACAGgtaatacttt ... ctcattttagGATGATTATTTGGATTGCTTTGGTGATCCTCAAACAATTGGAAAG


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

gaatgctgtattataacctatcttttttctctttccttttcccctctcattttagGATGATTATTTGGATTGCTTTGGTGATCCTCAAACAATTGGAAAG
          ttataac  putative branch site (score: 2)
                cctatcttttttctct  CT-rich tract
      tgtattataa  TA-rich tract