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gtaagatgtttcaaataattacttaatatcttttaagtcctatggaaaaaagctgggcatttggacttgtgcagtatatccaacgtggatgattgcatgtaccatttgctctagatataaactatcactttacagttgttatttacttattttagagttaaccatcctttagggtgctaactaaaattatacagGCACAACAATATCACCTTGGATTGTGACCTTGGAAGCATTAGAACCTTTTGCCAGTGAAGCCCCAAAACAG
species | Glycine max |
transcript | GLYMA09G01270.1 |
intron # | 8 |
splice site | 3' |
intron type | U2 |
EST: TCAGGCATGGGAATATATTCCTCTTGGTCCATTTCTTGGCAAGAGTTTTG GCACAACAATATCACCTTGGATTGTGACCTTGGAAGCATTAGAACCTTTTGEST: gi|151405820|gb|EV275635.1|EV275635
genomic: TCAGGCATGGGAATATATTCCTCTTGGTCCATTTCTTGGCAAGAGTTTTGgtaagatgtt ... aattatacagGCACAACAATATCACCTTGGATTGTGACCTTGGAAGCATTAGAACCTTTTG
EST: CAGGCATGGGAATATATTCCTCTTGGTCCATTTTCTTGGCAAGAGTTTTG GCACAACAATATCACCTTGGATTGTGACCTTGGAAGCATTAGAACEST: gi|193724130|gb|FK656410.1|FK656410
genomic: CAGGCATGGGAATATATTCCTCTTGGTCCATTT-CTTGGCAAGAGTTTTGgtaagatgtt ... aattatacagGCACAACAATATCACCTTGGATTGTGACCTTGGAAGCATTAGAAC
EST: TCAGGCATGGGAATATATTCCTCTTGGTCCATTTCTTGGCAAGAGTTTTG GCACAACAATATCACCTTGGATTGTGACCTTGGAAGCATTAGAACCTTTTGEST: gi|6567242|gb|AW234853.1|AW234853
genomic: TCAGGCATGGGAATATATTCCTCTTGGTCCATTTCTTGGCAAGAGTTTTGgtaagatgtt ... aattatacagGCACAACAATATCACCTTGGATTGTGACCTTGGAAGCATTAGAACCTTTTG
EST: TCAGGCATGGGAATATATTCCTCTTGGTCCATTTCTTGGCAAGAGTTTTG GCACAACAATATCACCTTGGATTGTGACCTTGGAAGCATTAGAACCTTTTGEST: gi|7232656|gb|AW568010.1|AW568010
genomic: TCAGGCATGGGAATATATTCCTCTTGGTCCATTTCTTGGCAAGAGTTTTGgtaagatgtt ... aattatacagGCACAACAATATCACCTTGGATTGTGACCTTGGAAGCATTAGAACCTTTTG
EST: TCAGGCATGGGAATATATTCCTCTTGGTCCATTTCTTGGCAAGAGTTTTG GCACAACAATATCACCTTGGATTGTGACCTTGGAAGCATTAGAACCTTTTGEST: gi|7232634|gb|AW567988.1|AW567988
genomic: TCAGGCATGGGAATATATTCCTCTTGGTCCATTTCTTGGCAAGAGTTTTGgtaagatgtt ... aattatacagGCACAACAATATCACCTTGGATTGTGACCTTGGAAGCATTAGAACCTTTTG
EST: TCAGGCATGGGAATATATTCCTCTTGGTCCATTTCTTGGCAAGAGTTTTG GCACAACAATATCACCTTGGATTGTGACCTTGGAAGCATTAGAACCTTTTGEST: gi|298184616|gb|HO029829.1|HO029829
genomic: TCAGGCATGGGAATATATTCCTCTTGGTCCATTTCTTGGCAAGAGTTTTGgtaagatgtt ... aattatacagGCACAACAATATCACCTTGGATTGTGACCTTGGAAGCATTAGAACCTTTTG
EST: TTAGGCATGGGAATATATTCCTCTTGGTCCATTTCTTGGCAAGAGTTTTG GCACAACAATATCACCCTGGATTGTGACCTTGGAAGCATTAGAACCTTTTGEST: gi|213601975|gb|DB976222.1|DB976222
genomic: TCAGGCATGGGAATATATTCCTCTTGGTCCATTTCTTGGCAAGAGTTTTGgtaagatgtt ... aattatacagGCACAACAATATCACCTTGGATTGTGACCTTGGAAGCATTAGAACCTTTTG
EST: TCAGGCATGGGAATATATTCCTCTTGGTCCATTTCTTGGCAAGAGTTTTG GCACAACAATATCACCTTGGATTGTGACCTTGGAAGCATTAGAACCTTTTGEST: gi|10847964|gb|BF071656.1|BF071656
genomic: TCAGGCATGGGAATATATTCCTCTTGGTCCATTTCTTGGCAAGAGTTTTGgtaagatgtt ... aattatacagGCACAACAATATCACCTTGGATTGTGACCTTGGAAGCATTAGAACCTTTTG
EST: TCAGGCATGGGAATATATTCCTCTTGGTCCATTTCTTGGCAAGAGTTTTG GCACAACAATATCACCTTGGATTGTGACCTTGGAAGCATTAGAACCTTTTG
genomic: TCAGGCATGGGAATATATTCCTCTTGGTCCATTTCTTGGCAAGAGTTTTGgtaagatgtt ... aattatacagGCACAACAATATCACCTTGGATTGTGACCTTGGAAGCATTAGAACCTTTTG
tatttacttattttagagttaaccatcctttagggtgctaactaaaattatacagGCACAACAATATCACCTTGGATTGTGACCTTGGAAGCATTAGAACCTTTTGCCAGTGAAGCCCCAAAACAG
taactaaaattataca TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtaagatgtttcaaataattacttaatatcttttaagtcctatggaaaaaagctgggcatttggacttgtgcagtatatccaacgtggatgattgcatgtaccatttgctctagatataaactatcactttacagttgttatttacttattttagagttaaccatcctttagggtgctaactaaaattatacagGCACAACAATATCACCTTGGATTGTGACCTTGGAAGCATTAGAACCTTTTGCCAGTGAAGCCCCAAAACAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGAAGC