1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' | 14 5' 3' | 15 5' 3' |
gttcctcacttcctcatatatttgttcaatttatctagtgtttgtacatgcttggggtagatgaattaaaaaaaaaatgcttccgtgttaatatcatgattaaagtttgcttttataaaaaattgatttaaacccataaatacacttttcagGTTGCTGCAAAGAAGCTGACATTGAAAAATGTCACTGACTATATCGTAGACGTTGTTTGTAAAAGAGCTGAAATTAATTACAACTATGGTGTCATTCTTA
species | Glycine max |
transcript | GLYMA09G01050.1 |
intron # | 8 |
splice site | 3' |
intron type | U2 |
EST: TGGAATGTGCTTTACAAACTCATCCAAACATTACTATTATTGGAGAAGAG GTTGCTGCAAAGAAGCTGACATTGAAAAATGTCACTGACTATNATCGTAGAEST: gi|208046800|gb|GD846836.1|GD846836
genomic: TGGAATGTGCTTTACAAACTCATCCAAACATTACTATTATTGGAGAAGAGgttcctcact ... cacttttcagGTTGCTGCAAAGAAGCTGACATTGAAAAATGTCACTGACTAT-ATCGTAGA
EST: TGGAATGTGCTTTACAAACTCATCCAAACATTACTATTATTGGAGAAGAG GTTGCTGCAAAGAAGCTGACATTGAAAAATGTCACTGACTATATCGTAGACEST: gi|4313720|gb|AI460839.1|AI460839
genomic: TGGAATGTGCTTTACAAACTCATCCAAACATTACTATTATTGGAGAAGAGgttcctcact ... cacttttcagGTTGCTGCAAAGAAGCTGACATTGAAAAATGTCACTGACTATATCGTAGAC
EST: TATTGGAGAAGAG GTTGCTGCAAAGAAGCTGACATTGAAAAATGTCACTGACTATATCGTAGAC
genomic: TATTGGAGAAGAGgttcctcact ... cacttttcagGTTGCTGCAAAGAAGCTGACATTGAAAAATGTCACTGACTATATCGTAGAC
gattaaagtttgcttttataaaaaattgatttaaacccataaatacacttttcagGTTGCTGCAAAGAAGCTGACATTGAAAAATGTCACTGACTATATCGTAGACGTTGTTTGTAAAAGAGCTGAAATTAATTACAACTATGGTGTCATTCTTA
aattgat putative branch site (score: 4)
cacttttc putative PPT
ttttataaaaaattga TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gttcctcacttcctcatatatttgttcaatttatctagtgtttgtacatgcttggggtagatgaattaaaaaaaaaatgcttccgtgttaatatcatgattaaagtttgcttttataaaaaattgatttaaacccataaatacacttttcagGTTGCTGCAAAGAAGCTGACATTGAAAAATGTCACTGACTATATCGTAGACGTTGTTTGTAAAAGAGCTGAAATTAATTACAACTATGGTGTCATTCTTA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCTGA