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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaagtatatcactttaattcattcttggcatacatcttggttgatgggattttctcacctatggtcaggttgatctggtcatctttcagaatgagttttcttatggttttcactgatcctgtagGCAAAGCCAAAAAAGATCTGCTCACAAATTGGATTGTGTACCTTTGATGGGACTCATGGTGTTAG

Basic information

species Glycine max
transcript GLYMA09G00810.1
intron # 8
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA09G00810.1 (Glycine max), 3'ss of exon 8
lower sequence: Vv10s0116g01210.t01 (Vitis vinifera), 3'ss of exon 9
---------------------------------------------------------------gtaagtatatcactttaattcattcttggcatacat--cttggttgatgggattttc-tcacctatggtcaggttg-atctggtcatctttcagaatgagttt------tcttatggttttcactgatcctgtagGCAAAGCCAAAAAAGATCTGCTCACAAATTGGATTGTGTACCTTTGATGGGACTCATGGTGTTAG
                                                                |   |     |   |  | ||   |  |  | |||  || ||  | ||  | |  | | |  | |   |||  |   |||  |   |||  | ||| |  |       |||| ||| |||     ||  |  |||||   ||| | ||||| ||||| |||||||| ||||| |||||||||||||||| ||||||| |
gtgaacactatctttttattatcttttatctagtttaatttctcaatctccagattacttcacatggctgctcaaacatgttccacattacgttttcataactggggaggtgttactggcgttaattgtttccagaatatgtctaatgtacttctataattaactgactacatcttttggattttgt--attttacagGCATCACCACAGAAGATTTGCTCGCAAATTGGGTTGTGCACCTTTGATGGGACTCGTGGTGTTGG
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|298187278|gb|HO034427.1|HO034427
EST:     CCGTTGTCAATCAATATGGACAAACAATCTTGGAATTGCTCTTGGCTGAA                         GCAAAGCCAAAAAAGATCTGCTCACAAATTGGATTGTGTACCTTTGATGGG
genomic: CCGTTGTCAATCAATATGGACAAACAATCTTGGAATTGCTCTTGGCTGAAgtaagtatat ... gatcctgtagGCAAAGCCAAAAAAGATCTGCTCACAAATTGGATTGTGTACCTTTGATGGG
EST: gi|51335675|gb|CO979541.1|CO979541
EST:     CCGTTGTCAATCAATATGGACAAACAATCTTGGAATTGCTCTTGGCTGAA                         GCAAAGCCAAAAAAGATCTGCTCACAAATTGGATTGTGTACCTTTGATGGG
genomic: CCGTTGTCAATCAATATGGACAAACAATCTTGGAATTGCTCTTGGCTGAAgtaagtatat ... gatcctgtagGCAAAGCCAAAAAAGATCTGCTCACAAATTGGATTGTGTACCTTTGATGGG
EST: gi|298180046|gb|HO025261.1|HO025261
EST:     CCGTTGTCAATCAATATGGACAAACAATCTTGGAATTGCTCTTGGCTGAA                         GCAAAGCCAAAAAAGATCTGCTCACAAATTGGATTGTGTACCTTTGATGGG
genomic: CCGTTGTCAATCAATATGGACAAACAATCTTGGAATTGCTCTTGGCTGAAgtaagtatat ... gatcctgtagGCAAAGCCAAAAAAGATCTGCTCACAAATTGGATTGTGTACCTTTGATGGG
EST: gi|24136383|gb|BU926893.1|BU926893
EST:     CCGTTGTCAATCAATATGGACAAACAATCTTGGAATTGCTCTTGGCTGAA                         GCAAAGCCAAAAAAGATCTGCTCACAAATTGGATTGTGTACCTTTGATGGG
genomic: CCGTTGTCAATCAATATGGACAAACAATCTTGGAATTGCTCTTGGCTGAAgtaagtatat ... gatcctgtagGCAAAGCCAAAAAAGATCTGCTCACAAATTGGATTGTGTACCTTTGATGGG


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

ttgatctggtcatctttcagaatgagttttcttatggttttcactgatcctgtagGCAAAGCCAAAAAAGATCTGCTCACAAATTGGATTGTGTACCTTTGATGGGACTCATGGTGTTAG
                                         cactgat  putative branch site (score: 3)
                          ttttcttat  TA-rich tract