Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   		6  
 5'  3'   		7  
 5'  3'   		8  
 5'  3'   		9  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

...ctaacagctatcttgctaatattgttggaattgcaatttctatttattagtagttttgttggattaaatttacgagaaagaacatgaatcatgctggcagGGGGCTTGTAAATGACACATACAAGATGGACCTAATTCTTGTACATCCTCCGCATTTGATTGCTTTAGCTTGCATATACATTGCTAGTGTGCTCAGGGAG

Basic information

species Glycine max
transcript GLYMA08G46170.2
intron # 8
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA08G46170.2 (Glycine max), 3'ss of exon 8
lower sequence: GRMZM2G408242_T03 (Zea mays), 3'ss of exon 7
-ctaacagctatcttgctaatat-tgttggaattgcaatttctatttattagtagttttgttggattaaatttacgagaaagaacatgaatcatg---ctggcagGGGGCTTGTAAATGACACATACAAGATGGACCTAATTCTTGTACATCCTCCGCATTTGATTGCTTTAGCTTGCATATACATTGCTAGTGTGCTCAGGGAG
 ||||         || |||| | || |     | ||  |  |   | ||    |||  |||  ||    |||   ||||| |||     | |||   || ||||||| ||||| ||||| ||||||||||||||||| || ||  || | |||||  |  |||||||  | || ||||||||||| || |||||  | |  || 
tctaattatggg--tgataatgtatgctcagtcttcagctatt-cctgttgcctgtt--gttacatctttttttaaagaaaaaactgaccttatgtgacttgcagGGGCCTTGTTAATGATACATACAAGATGGACCTTATCCTCATATACCCTCCCTACATGATTGCACTGGCCTGCATATACATAGCGAGTGTTTTGAAAGAT

upper sequence: GLYMA08G46170.2 (Glycine max), 3'ss of exon 8
lower sequence: Vv00s0360g00050.t01 (Vitis vinifera), 3'ss of exon 7
ctaacagctatcttgctaatattgttggaattgcaatttctatttattagtagttttgt-tggatta---aatttacgagaaagaacatgaatcatgctggcagGGGGCTTGTAAATGACACATACAAGATGGACCTAATTCTTGTACATCCTCCGCATTTGATTGCTTTAGCTTGCATATACATTGCTAGTGTGCTCAGGGAG
 |    |    |||   |   |  |           ||||| | |||  |  ||| ||  || | ||    || ||        |   || |||||      |||||  |||| |||||||| ||||| ||||| || |||||  |  ||||||| ||| ||||||| |||||||||||||||||||| ||||| | ||  || 
ttgtgtgtgtgcttttcagcttcctgcccgccaagctttctttgtatgtgaggttgtgcatgtactacaagatctaatgttggaattttggatcataa----agGGGAATTGTCAATGACACCTACAAAATGGATCTTATTCTCATTTATCCTCCACATCTGATTGCCTTAGCTTGCATATACATTGCAAGTGTACACAAAGAT
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|105633058|gb|DW246615.1|DW246615
EST:     TTGCTTCAGGATGCAGGTCTGAATGATCTAAACATGACTCAACTAACCTG                         GGGGTTTGTAAATGACACATACAAGATGGACCTAATTCTTGT
genomic: TTGCTTCAGGATGCAGGTCTGAATGATCTAAACATGACTCAACTAACTTGgtaagagttc ... atgctggcagGGGGCTTGTAAATGACACATACAAGATGGACCTAATTCTTGT
EST: gi|9903205|gb|BE612173.1|BE612173
EST:     CTAAACATGACTCAACTAACTTG                         GGGGCTTGTAAATGACACATACAAGATGGACCTAATTCTTGTACATCCTCC
genomic: CTAAACATGACTCAACTAACTTGgtaagagttc ... atgctggcagGGGGCTTGTAAATGACACATACAAGATGGACCTAATTCTTGTACATCCTCC
EST: gi|16343443|gb|BI969038.1|BI969038
EST:     TTGCTTCAGGATGCAGGTCTGAATGATCTAAACATGACTCAACTAACTTG                         GGGGCTTGTAAATGACACATACAAGATGGACCTAATTCTTGTACATCCTCC
genomic: TTGCTTCAGGATGCAGGTCTGAATGATCTAAACATGACTCAACTAACTTGgtaagagttc ... atgctggcagGGGGCTTGTAAATGACACATACAAGATGGACCTAATTCTTGTACATCCTCC
EST: gi|21256573|gb|BQ453461.1|BQ453461
EST:     TTGCTTCAGGATGCAGGTCTGAATGATCTAAACATGACTCAACTAACTTG                         GGGGCTTGTAAATGACACATACAAGATGGACCTAATTCTTGTACATCCTCC
genomic: TTGCTTCAGGATGCAGGTCTGAATGATCTAAACATGACTCAACTAACTTGgtaagagttc ... atgctggcagGGGGCTTGTAAATGACACATACAAGATGGACCTAATTCTTGTACATCCTCC
EST: gi|192305231|gb|FG993969.1|FG993969
EST:     TTGCTTCAGGATGC-GGTCTGA-TGATCTAAACATGACTCA-CTAACTTG                         GGGGCTTGTAA-TGACACATACA
genomic: TTGCTTCAGGATGCAGGTCTGAATGATCTAAACATGACTCAACTAACTTGgtaagagttc ... atgctggcagGGGGCTTGTAAATGACACATACA


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

attagtagttttgttggattaaatttacgagaaagaacatgaatcatgctggcagGGGGCTTGTAAATGACACATACAAGATGGACCTAATTCTTGTACATCCTCCGCATTTGATTGCTTTAGCTTGCATATACATTGCTAGTGTGCTCAGGGAG
             ttggattaaattta  TA-rich tract