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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gcatgttcattacctaagagggttggcattttattgcttcatccttcagtgtattgttctcacctttctcttttggttgtagATGGATCTGCAATTTCTCTTACATACATTGCTTCAGAAAGGATCATTCCTGG

Basic information

species Glycine max
transcript GLYMA08G45990.1
intron # 8
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA08G45990.1 (Glycine max), 3'ss of exon 8
lower sequence: Vv06s0004g01310.t01 (Vitis vinifera), 3'ss of exon 8
-------------------------gcatgttcattacctaagagggttggcattttattgcttcatccttcag----------tgtattgttctcacctttctcttttg----------gttgtagATGGATCTGCAATTTCTCTTACATACATTGCTTCAGAAAGGATCATTCCTGG
                            |||||  | || |   |  ||  |       | |||| |  || |           | || ||||   |  |||   | |||           ||  || ||||||| |||||||||| |||||||||||||| || ||||||||||| ||
gcacacatctttccccatacttgttctgtgttcccttcccatccgttttttctgaactctacttccttttttacggtggtaagttatactgttgctagatttaattcttgccatgttgctattacagGTGGATCTTCAATTTCTCTAACATACATTGCTTCTGAGAGGATCATTCCAGG
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|16345261|gb|BI970856.1|BI970856
EST:     TTACTCTTATATTTCTTTACTCAAACACTTTCTTCCAATCATGAACCCAG                         ATGGATCTGCAATTTCTCTTACATACATTGCTTCAGAAAGGATCATTCCTG
genomic: TTACTCTTATATTTCTTTACTCAAACACTTTCTTCCAATCATGAACCCAGgcatgttcat ... ttggttgtagATGGATCTGCAATTTCTCTTACATACATTGCTTCAGAAAGGATCATTCCTG






















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

attttattgcttcatccttcagtgtattgttctcacctttctcttttggttgtagATGGATCTGCAATTTCTCTTACATACATTGCTTCAGAAAGGATCATTCCTGG
                             ttctcac  putative branch site (score: 2)
                        tattgttctcaccttt  CT-rich tract
                        tattgtt  TA-rich tract