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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaccctgcaatttatgggccttttcaattatctcacttagaactccaaacttttgattttgtcattacagttaaaccatcttgatagttgctactatgcagATACGGGGTATGCATACCCTGATACGTGATGCCAAGACAACAAAGCATGATTTTATATTTTACTCTGATCGTTTGATTCGATTG

Basic information

species Glycine max
transcript GLYMA08G45270.1
intron # 8
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA08G45270.1 (Glycine max), 3'ss of exon 8
lower sequence: Vv19s0015g01730.t01 (Vitis vinifera), 3'ss of exon 8
-----------------------------------------------------------------------gtaccctgcaatttatgggccttttcaattatc---tcactta-------gaactccaaact---tttgattttgtcattacagtt--aaac--catct---tga-----tagttgctactatgcagATACGGGGTATGCATACCCTGATACGTGATGCCAAGACAACAAAGCATGATTTTATATTTTACTCTGATCGTTTGATTCGATTG
                                                                        ||   | ||| ||    | | ||  || | |    |||| |        | | || | | |   ||| ||||    |||  ||||  |||   ||| |   |||     || ||| |   || |||||||||||||||||||| || |||||||||||  | |||||||||||||||||| | |||||  |||| || |||||||| |||
gtatatcagctcttcctatttgctattattatttactgtgggtgtgtgtgcctgtgtgtgtgcgtgtgtttttaaattccaaatttcatgtcattgtaaatgtaaggtcacatgatcttgtggattcgatattcagttttatttgcctattgaagttccaaatttcatatgattgaagctttatttgatttgatccagATACGGGGTATGCATACACTTATACGTGATGCTCAAACAACAAAGCATGATTTTGTCTTTTATGCTGACCGGTTGATTCGTTTG


















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

aaacttttgattttgtcattacagttaaaccatcttgatagttgctactatgcagATACGGGGTATGCATACCCTGATACGTGATGCCAAGACAACAAAGCATGATTTTATATTTTACTCTGATCGTTTGATTCGATTG
                                tcttgat  putative branch site (score: 4)
     tttgatttt  TA-rich tract