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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtcagtatttattatttaattattccactatgttgatagctatggacatatatcttcacttaccccacgtatttgtagGATGAGATGCAGAAGACTTGGCTCTGTAAAAGGTGTGAGACCATGAGTGCGAAATTGAG

Basic information

species Glycine max
transcript GLYMA08G42870.1
intron # 8
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA08G42870.1 (Glycine max), 3'ss of exon 8
lower sequence: AT1G50710.1 (Arabidopsis thaliana), 3'ss of exon 8
gtcagtatttattatttaattattccactatgttgatagctatggacatatatcttcacttaccccacgtatt--tgtagGATGAGATGCAGAAGACTTGGCTCTGTAAAAGGTGTGAGACCATGAGTGCGAAATTGAG
|| ||  |||     ||    | |  | |    || |  || |  | |||||      ||||| | |  ||||     || |||||||||||||||||||| | |||||||||||||||||||||| ||| ||||| ||
gtaagggtttcagtgttttccaattgatttaaatgctgcctgttcatatata-----gcttactctatatattgtcacagAATGAGATGCAGAAGACTTGGTTGTGTAAAAGGTGTGAGACCATGAATGCAAAATTAAG

upper sequence: GLYMA08G42870.1 (Glycine max), 3'ss of exon 8
lower sequence: Vv19s0090g00440.t01 (Vitis vinifera), 3'ss of exon 8
--------------------------------------------------------------------------gtc-agtatttattatttaattattccactatgttgatagctatggacatatatcttcacttaccccacgta-------tttgtagGATGAGATGCAGAAGACTTGGCTCTGTAAAAGGTGTGAGACCATGAGTGCGAAATTGAG
                                                                          |||  |||  |   ||||  ||||     | |  |  |  |  ||||   |  |    |||||    |  |        ||| ||||||||  | || || |||||||| |||||||||||||||||||||||||| ||||||||
gtaagtttctccattttagttcattctaatgtttaaagatgtatttgagtatcataattaacattatgctttgtgtctggtaaatccaatttctttatgattatgttcttttttccttggaggaactttgaaacttattatatcttgctttcttttatagGATGAACTACAAAAAACTTGGCTATGTAAAAGGTGTGAGACCATGAGTGCAAAATTGAG


















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tccactatgttgatagctatggacatatatcttcacttaccccacgtatttgtagGATGAGATGCAGAAGACTTGGCTCTGTAAAAGGTGTGAGACCATGAGTGCGAAATTGAG
                                 cacttac  putative branch site (score: 2)
                        atatatctt  TA-rich tract