1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' |
gtactgttcttctgatatttacagatctaataacttacaacctcattatttacttcctcaagggtgtatttatttttgcagCTCCAACCTTTGCTGAACAAGATCAGTGAAATAGGAGAGAAGTATGATAAAACTCCAACACAG
species | Glycine max |
transcript | GLYMA08G41630.1 |
intron # | 8 |
splice site | 3' |
intron type | U2 |
EST: CACCAAGTGGGCCCCGAGGCAGAATTTATACTCCAGAATTCCTAACAAGG CTCCAACCTTTGCTGEST: gi|31464900|gb|CD406928.1|CD406928
genomic: CACCAAGTGGGCCCCGAGGCAGAATTTATACTCCAGAATTCCTAACAAGGgtactgttct ... atttttgcagCTCCAACCTTTGCTG
EST: CACCAAGTGGGCCCCGAGGCAGAATTTATACTCCAGAATTCCTAACAAGG CTCCAACCTTTGCTGAACAAGATCAGTGAAATAGGAGAGAAGTATGATAAAEST: gi|14205390|gb|BG839068.1|BG839068
genomic: CACCAAGTGGGCCCCGAGGCAGAATTTATACTCCAGAATTCCTAACAAGGgtactgttct ... atttttgcagCTCCAACCTTTGCTGAACAAGATCAGTGAAATAGGAGAGAAGTATGATAAA
EST: CACCAAGTGGGCCCCGAGGCAGAATTTATACTCCAGAATTCCTAACAAGG CTCCAACCTTTGCTGAACAAGATCAGTGAAATAGGAGAGAAGTATGATAAAEST: gi|105631910|gb|DW246240.1|DW246240
genomic: CACCAAGTGGGCCCCGAGGCAGAATTTATACTCCAGAATTCCTAACAAGGgtactgttct ... atttttgcagCTCCAACCTTTGCTGAACAAGATCAGTGAAATAGGAGAGAAGTATGATAAA
EST: CACCAAGTGGGCCCCGAGGCAGAATTTATACTCCAGAATTCCTAACAAGG CTCCAACCTTTGCTGAACAAGATCAGTGAAATAGGAGAGAAGTATGATAAAEST: gi|7690984|gb|AW759119.1|AW759119
genomic: CACCAAGTGGGCCCCGAGGCAGAATTTATACTCCAGAATTCCTAACAAGGgtactgttct ... atttttgcagCTCCAACCTTTGCTGAACAAGATCAGTGAAATAGGAGAGAAGTATGATAAA
EST: CACCAAGTGGGCCCCGAGGCAGAATTTATACTCCAGAATTCCTAACAAGG CTCCAACCTTTGCTGAACAAGATCAGTGAAATAGGAGAGAAGTATGATAAAEST: gi|22928755|gb|BU545894.1|BU545894
genomic: CACCAAGTGGGCCCCGAGGCAGAATTTATACTCCAGAATTCCTAACAAGGgtactgttct ... atttttgcagCTCCAACCTTTGCTGAACAAGATCAGTGAAATAGGAGAGAAGTATGATAAA
EST: CACCAAGTGGGCCCCGAGGCAGAATTTATACTCCAGAATTCCTAACAAGG CTCCAACCTTTGCTGAACAAGATCAGTGAAATAGGAGAGAAGTATGATAAA
genomic: CACCAAGTGGGCCCCGAGGCAGAATTTATACTCCAGAATTCCTAACAAGGgtactgttct ... atttttgcagCTCCAACCTTTGCTGAACAAGATCAGTGAAATAGGAGAGAAGTATGATAAA
ctaataacttacaacctcattatttacttcctcaagggtgtatttatttttgcagCTCCAACCTTTGCTGAACAAGATCAGTGAAATAGGAGAGAAGTATGATAAAACTCCAACACAG
tttattttt CT-rich tract
tgtatttattttt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtactgttcttctgatatttacagatctaataacttacaacctcattatttacttcctcaagggtgtatttatttttgcagCTCCAACCTTTGCTGAACAAGATCAGTGAAATAGGAGAGAAGTATGATAAAACTCCAACACAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGATCA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGGAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAAGT