1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' |
...tgtgattaattattttttttaattagtgtgtcatttttttttcttttcttagttatgctatatcgtattgaaaatttcttgctcacttcaatgcaggaagCTGTGAATGTATCACTTGGGAACCTATTGACATATCGATTTGTGAGAGATGCAGTTGTGAAGAAAACTCTTGCCTTGAAAGGTGCACATTACAATTTCGT
species | Glycine max |
transcript | GLYMA08G39510.1 |
intron # | 8 |
splice site | 3' |
intron type | U2 |
EST: AGCAAACACATTAGAATTCTCTGAGCAATGTACCAGCTGCGAGAAGG-AA GEST: gi|192309131|gb|FG999400.1|FG999400
genomic: AGCAAACACATTAGAATTCTCTGAGCAATGTACCAGCTGCGAGAAGGCAAgtaaattcta ... atgcaggaag-
EST: AGCAAACACATTAGAATTCTCTGAGCAATGTACCAGCTGCGAGAAGG-AA GEST: gi|14009065|gb|BG725678.1|BG725678
genomic: AGCAAACACATTAGAATTCTCTGAGCAATGTACCAGCTGCGAGAAGGCAAgtaaattcta ... atgcaggaag-
EST: AGCAAACACATTAGAATTCTCTGAGCAATGTACCAGCTGCGAGAAGG-AA GEST: gi|14009065|gb|BG725678.1|BG725678
genomic: AGCAAACACATTAGAATTCTCTGAGCAATGTACCAGCTGCGAGAAGGCAAgtaaattcta ... atgcaggaag-
EST: AGCAAACACATTAGAATTCTCTGAGCAATGTACCAGCTGCGAGAAGG-AA GEST: gi|192305002|gb|FG997128.1|FG997128
genomic: AGCAAACACATTAGAATTCTCTGAGCAATGTACCAGCTGCGAGAAGGCAAgtaaattcta ... atgcaggaag-
EST: AGCAAACACATTAGAATTCTCTGAGCAATGTACCAGCTGCGAGAAG--AA GEST: gi|192305002|gb|FG997128.1|FG997128
genomic: AGCAAACACATTAGAATTCTCTGAGCAATGTACCAGCTGCGAGAAGGCAAgtaaattcta ... atgcaggaag-
EST: AGCAAACACATTAGAATTCTCTGAGCAATGTACCAGCTGCGAGAAG--AA GEST: gi|192309132|gb|FG999401.1|FG999401
genomic: AGCAAACACATTAGAATTCTCTGAGCAATGTACCAGCTGCGAGAAGGCAAgtaaattcta ... atgcaggaag-
EST: AGCAAACACATTAGAATTCTTTGAGCAATGTACCAGCTGCGAGAAGG-AA GEST: gi|192309132|gb|FG999401.1|FG999401
genomic: AGCAAACACATTAGAATTCTCTGAGCAATGTACCAGCTGCGAGAAGGCAAgtaaattcta ... atgcaggaag-
EST: AGCAAACACATTAGAATTCTTTGAGCAATGTACCAGCTGCGAGAAGG-AA GEST: gi|31307029|gb|CD392232.1|CD392232
genomic: AGCAAACACATTAGAATTCTCTGAGCAATGTACCAGCTGCGAGAAGGCAAgtaaattcta ... atgcaggaag-
EST: AGCAAACACATTAGAATTCTCTGAGCAATGTACCAGCTGCGAGAAGG-AA GEST: gi|31307029|gb|CD392232.1|CD392232
genomic: AGCAAACACATTAGAATTCTCTGAGCAATGTACCAGCTGCGAGAAGGCAAgtaaattcta ... atgcaggaag-
EST: AGCAAACACATTAGAATTCTCTGAGCAATGTACCAGCTGCGAGAAGG-AA GEST: gi|192297727|gb|FG989962.1|FG989962
genomic: AGCAAACACATTAGAATTCTCTGAGCAATGTACCAGCTGCGAGAAGGCAAgtaaattcta ... atgcaggaag-
EST: AGCAAACACATTAGAATTCTCTGAGCAATGTACCAGCTGCGAGAAGG-AA GEST: gi|192297727|gb|FG989962.1|FG989962
genomic: AGCAAACACATTAGAATTCTCTGAGCAATGTACCAGCTGCGAGAAGGCAAgtaaattcta ... atgcaggaag-
EST: AGCAAACACATTAGAATTCTCTGAGCAATGTACCAGCTGCGAGAAGG-AA G
genomic: AGCAAACACATTAGAATTCTCTGAGCAATGTACCAGCTGCGAGAAGGCAAgtaaattcta ... atgcaggaag-
ttcttagttatgctatatcgtattgaaaatttcttgctcacttcaatgcaggaagCTGTGAATGTATCACTTGGGAACCTATTGACATATCGATTTGTGAGAGATGCAGTTGTGAAGAAAACTCTTGCCTTGAAAGGTGCACATTACAATTTCGT
tgctcac putative branch site (score: 2)
tattgaaaatttctt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| tgtgattaattattttttttaattagtgtgtcatttttttttcttttcttagttatgctatatcgtattgaaaatttcttgctcacttcaatgcaggaagCTGTGAATGTATCACTTGGGAACCTATTGACATATCGATTTGTGAGAGATGCAGTTGTGAAGAAAACTCTTGCCTTGAAAGGTGCACATTACAATTTCGT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAA
- - - - - - - - - - - - -gtgtgtc
- - - - - - - - - - - - - - - - - - - - - - - - - -gttatgc