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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaagtataactcctgtacctgacattgactttattaatgctctgtaattaactatatgtgcaatcagGTCCAACTCATGTGCTTGTTGTCCGTGGATTGGATGAAAATGCTGATGAGGAAATGCTCCGCTATGAGTTTTCCAAACATGCTCCGATTAAG

Basic information

species Glycine max
transcript GLYMA08G35510.1
intron # 8
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA08G35510.1 (Glycine max), 3'ss of exon 8
lower sequence: LOC_Os02g07070.1 (Oryza sativa), 3'ss of exon 10
-gtaagtataactcctgtacc-tgacattg-----actttattaat-gctctgtaattaactatatgtgcaatcagGTCCAACTCATGTGCTTGTTGTCCGTGGATTGGATGAAAATGCTGATGAGGAAATGCTCCGCTATGAGTTTTCCAAACATGCTCCGATTAAG
   |||      || | ||   |   |||      ||| | ||    | |   | ||||   |   |     |||||||||||||||||  | ||||| |||||  |||||||||||||||| ||||||||||| || ||||| ||| |||| ||||| || || |||
gcaaagctctgttcttctattgtaggattattaaaactattttgccagttgccttattagacactagcattttcagGTCCAACTCATGTTTTAGTTGTTCGTGGTCTGGATGAAAATGCTGACGAGGAAATGCTTCGATATGAATTTGCCAAGCATGCACCTATAAAG

upper sequence: GLYMA08G35510.1 (Glycine max), 3'ss of exon 8
lower sequence: GRMZM2G173777_T01 (Zea mays), 3'ss of exon 9
-----------gtaagtataactcctgtacctga-cattgactttattaatgctctgtaattaactatatgtgcaatcagGTCCAACTCATGTGCTTGTTGTCCGTGGATTGGATGAAAATGCTGATGAGGAAATGCTCCGCTATGAGTTTTCCAAACATGCTCCGATTAAG
           |     |||  | |  |     | |||    | ||||      |  || |||  | |         ||||||||||||||||  | ||||| ||||| ||||||||||||||||||||||||||||| || || || ||| | || || || || || |||
gcaagttttgtgcttccatagtttcattctggaatcatgtgatatattgtgctgccttatttagttgtggtcatttgcagGTCCAACTCATGTTTTAGTTGTTCGTGGCTTGGATGAAAATGCTGATGAGGAAATGCTTCGGTACGAATTTGCTAAGCACGCACCAATAAAG

upper sequence: GLYMA08G35510.1 (Glycine max), 3'ss of exon 8
lower sequence: GRMZM2G151614_T03 (Zea mays), 3'ss of exon 10
gtaagtataac----tcctgtacctgacattgactttat-taatgct-ctgtaattaactatatgtgcaatcagGTCCAACTCATGTGCTTGTTGTCCGTGGATTGGATGAAAATGCTGATGAGGAAATGCTCCGCTATGAGTTTTCCAAACATGCTCCGATTAAG
| ||||  |      | ||| |  |  | |  ||| | | |  |||| |  || |||  |           ||||||||||||||||  | ||||| ||||| || |||||||||||||||||||||||||| || || || ||| | || || || ||  | |||
gcaagttcagttttattctggatttatc-tgaactatgtattgtgctgccttatttagttgctgtcatttgcagGTCCAACTCATGTTTTAGTTGTTCGTGGCTTAGATGAAAATGCTGATGAGGAAATGCTTCGGTACGAATTTGCTAAGCACGCACCATTAAAG

upper sequence: GLYMA08G35510.1 (Glycine max), 3'ss of exon 8
lower sequence: AT3G54230.2 (Arabidopsis thaliana), 3'ss of exon 10
-------------------------------------------------------------------gtaag--tataactcctgtacctg---acattgactttattaatgctctgtaattaact-atatgtgcaatcagGTCCAACTCATGTGCTTGTTGTCCGTGGATTGGATGAAAATGCTGATGAGGAAATGCTCCGCTATGAGTTTTCCAAACATGCTCCGATTAAG
                                                                    ||||   |||     ||||| |    ||||    | |||   |    |  | |   || || |       |||||||||||||||| || ||||| ||||| ||||||||| ||||||||||||||||||| || ||||| ||||||||||||||||| || |||
gttctgatcagcatttttatttaagatgttttaaatttctttcttgagtcagaaacagtcgcaactgttaaggccatagtctttgtacttttctacatgccatatatacctaagatacattctgcttattttcttttccagGTCCAACTCATGTCCTGGTTGTACGTGGGTTGGATGAAGATGCTGATGAGGAAATGCTTCGGTATGAATTTTCCAAACATGCTCCTATCAAG

upper sequence: GLYMA08G35510.1 (Glycine max), 3'ss of exon 8
lower sequence: Vv02s0012g00870.t01 (Vitis vinifera), 3'ss of exon 8
-----gtaagtataactcctgtacctgacattgactt--tatta-atgctctgtaattaactat----atgtgcaatcagGTCCAACTCATGTGCTTGTTGTCCGTGGATTGGATGAAAATGCTGATGAGGAAATGCTCCGCTATGAGTTTTCCAAACATGCTCCGATTAAG
        | |  |   | | ||  || |||  | |    |||| || |  |||||||  |||     || || |||||||||| |  |||||  | ||||| || || ||||||||||||||||||||||||||||| || ||||| ||||| ||||||||||| || |||
gttggaacactccattgcttttaattggcatgcattaagcattatattcattgtaatttgctaagttgatatgtaatcagGTCCTATCCATGTTTTGGTTGTTCGAGGTTTGGATGAAAATGCTGATGAGGAAATGCTTCGTTATGAATTTTCTAAACATGCTCCAATCAAG


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

ctgtacctgacattgactttattaatgctctgtaattaactatatgtgcaatcagGTCCAACTCATGTGCTTGTTGTCCGTGGATTGGATGAAAATGCTGATGAGGAAATGCTCCGCTATGAGTTTTCCAAACATGCTCCGATTAAG
                                 aattaac  putative branch site (score: 2)
           attgactttattaat  TA-rich tract