1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' |
...aattttccttatctttttccaataacaattttggatcactagaaagttttctttccatgaccttactctgcagcttcatctgtatttttacttgttgcagATTTAGTGCTTTCAAATAAACTTGTCTTCTATGACCTTGAAAATCAGGCTATTGGATGGGCTGAGTACAACT
species | Glycine max |
transcript | GLYMA08G29040.1 |
intron # | 8 |
splice site | 3' |
intron type | U2 |
EST: AAATAGTGGGACACAATCAAGAGATAGCAAAAATATGACTTTATTGGGAG ATTTAGTGCTTTCAAATAAACTTGTCTTCTATGACCTTGAAEST: gi|33387719|gb|CA850926.1|CA850926
genomic: AAATAGTGGGACACAATCAAGAGATAGCAAAAATATGACTTTATTGGGAGgtattctctt ... cttgttgcagATTTAGTGCTTTCAAATAAACTTGTCTTCTATGACCTTGAA
EST: AAA-CGTGGGACACAATCAAGAGATAGCNAAAATATGACTTTATTGGGAG ATTTAGCGCTTTCAAATAAACTTGNCTTCTATGACCTTGAAAATCAGGCTAEST: gi|17023800|gb|BM094834.1|BM094834
genomic: AAATAGTGGGACACAATCAAGAGATAGCAAAAATATGACTTTATTGGGAGgtattctctt ... cttgttgcagATTTAGTGCTTTCAAATAAACTTGTCTTCTATGACCTTGAAAATCAGGCTA
EST: AATAGTGGGACACAATCAAGAGATAGCAAAAATATGACTTTATTGGGAG ATTTAGTGCTTTCAAATAAACTTGTCTTCTATGACCTTGAAAATCAGGCTA
genomic: AATAGTGGGACACAATCAAGAGATAGCAAAAATATGACTTTATTGGGAGgtattctctt ... cttgttgcagATTTAGTGCTTTCAAATAAACTTGTCTTCTATGACCTTGAAAATCAGGCTA
gttttctttccatgaccttactctgcagcttcatctgtatttttacttgttgcagATTTAGTGCTTTCAAATAAACTTGTCTTCTATGACCTTGAAAATCAGGCTATTGGATGGGCTGAGTACAACT
accttac putative branch site (score: 3)
tttttactt putative PPT
tatttttacttgtt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| aattttccttatctttttccaataacaattttggatcactagaaagttttctttccatgaccttactctgcagcttcatctgtatttttacttgttgcagATTTAGTGCTTTCAAATAAACTTGTCTTCTATGACCTTGAAAATCAGGCTATTGGATGGGCTGAGTACAACT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -ctctgca
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - catctgt