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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaatgctattctctgaactagagcatgccatgcagggcagcatatatatttgttgtgattttaaagatacttattgtgcatgctttgcttccctcccggctcccagGTGGTGAGAGCTTTGGATTCCTTAGATGAGTTTACAGATCTCAATAACGGAATGAAACCGGGGCAGAGTTCAGTGTTTGATTCTGCACAGCAATCTGCAC

Basic information

species Glycine max
transcript GLYMA08G28600.1
intron # 8
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|7685910|gb|AW756558.1|AW756558
EST:     CTGCAGCCTGTGTACGCCACTCGTCGGTGAAGAGACCACGCATGAGTCAG                         GTGGTGAGAGCTTAGGATTCCTTAGATGAGTTTACAGATCTCAATAACGGA
genomic: CTGCAGCCTGTGTACGCCACTCGTCGGTGAAGAGACCACGCATGAGTCAGgtaatgctat ... cggctcccagGTGGTGAGAGCTTTGGATTCCTTAGATGAGTTTACAGATCTCAATAACGGA






















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

gttgtgattttaaagatacttattgtgcatgctttgcttccctcccggctcccagGTGGTGAGAGCTTTGGATTCCTTAGATGAGTTTACAGATCTCAATAACGGAATGAAACCGGGGCAGAGTTCAGTGTTTGATTCTGCACAGCAATCTGCAC
                               ctttgcttccctcccg  CT-rich tract
      attttaaagatactta  TA-rich tract