1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' |
gtactggccaatatattttccatctatatttataatttcccaagctttccactgacaatataactctatcgttattggttgctgatccttatagATTCGAGCTTTGGAGAAAAAGAAGAAGTCTGGAAAGTTTGCAAAGAAGGTCAAAGCAAAGACAAGGAGGAAAATGCACGAGATGTCCAATCCTCTGGAGC
species | Glycine max |
transcript | GLYMA08G28320.1 |
intron # | 8 |
splice site | 3' |
intron type | U2 |
EST: TTGGAGGCCCAACTTTATATGAGAATCCGCTCTATGTGTCACCAAATCAG ATTCGAGCTTTGGAGAAAAAGAAGAAGTCTGGAAAGTTTGCAAAGAAGGTCEST: gi|10253404|gb|BE821170.1|BE821170
genomic: TTGGAGGCCCAACTTTATATGAGAATCCGCTCTATGTGTCACCAAATCAGgtactggcca ... atccttatagATTCGAGCTTTGGAGAAAAAGAAGAAGTCTGGAAAGTTTGCAAAGAAGGTC
EST: TTGGAGGCCCAACTTTATATGAGAATCCGCTCTATGTGTCACCAAATCAG ATTCGAGCTTTGGAGAAAAAGAAGAAGTCTGGAAAGTTTGCAAAGAAGGTCEST: gi|13789330|gb|BG651921.1|BG651921
genomic: TTGGAGGCCCAACTTTATATGAGAATCCGCTCTATGTGTCACCAAATCAGgtactggcca ... atccttatagATTCGAGCTTTGGAGAAAAAGAAGAAGTCTGGAAAGTTTGCAAAGAAGGTC
EST: TTGGAGGCCCAACTTTATATGAGAATCCGCTCTATGTGTCACCAAATCAG ATTCGAGCTTTGGAGAAAAAGAAGAAGTCTGGAAAGTTTGCAAAGAAGGTCEST: gi|151396331|gb|EV266208.1|EV266208
genomic: TTGGAGGCCCAACTTTATATGAGAATCCGCTCTATGTGTCACCAAATCAGgtactggcca ... atccttatagATTCGAGCTTTGGAGAAAAAGAAGAAGTCTGGAAAGTTTGCAAAGAAGGTC
EST: TTGGAGGCCCAACTTTATATGAGAATCCGCTCTATGTGTCACCAAATCAG ATTCGAGCTTTGGAGAAAAAGAAGAAGTCTGGAAAGTTTGCAAAGAAGGTCEST: gi|208070606|gb|GD867587.1|GD867587
genomic: TTGGAGGCCCAACTTTATATGAGAATCCGCTCTATGTGTCACCAAATCAGgtactggcca ... atccttatagATTCGAGCTTTGGAGAAAAAGAAGAAGTCTGGAAAGTTTGCAAAGAAGGTC
EST: TTGGAGGCCCAACTTTATATGAGAATCCGCTCTATGTGTCACCAAATCAG ATTCGAGCTTTGGAGAAAAAGAAGAAGTCTGGAAAGTTTEST: gi|51342958|gb|CO983700.1|CO983700
genomic: TTGGAGGCCCAACTTTATATGAGAATCCGCTCTATGTGTCACCAAATCAGgtactggcca ... atccttatagATTCGAGCTTTGGAGAAAAAGAAGAAGTCTGGAAAGTTT
EST: TTGGAGGCCCAACTTTATATGAGAATCCGCTCTATGTGTCACCAAATCAG ATTCGAGCTTTGGAGAAAAAGAAGAAGTCTGGAAAGTTTGCAAAGAAGGTCEST: gi|151412110|gb|EV281922.1|EV281922
genomic: TTGGAGGCCCAACTTTATATGAGAATCCGCTCTATGTGTCACCAAATCAGgtactggcca ... atccttatagATTCGAGCTTTGGAGAAAAAGAAGAAGTCTGGAAAGTTTGCAAAGAAGGTC
EST: TTGGAGACCCAACTTTATATGAGAATCCGCTCTATGTGTCACCAAATCAG ATTCGAGCTTTGGAGAAAAAGAAGAAGTCTGGAAAGTTTGCAAAGAAGGTCEST: gi|58018455|gb|CX705197.1|CX705197
genomic: TTGGAGGCCCAACTTTATATGAGAATCCGCTCTATGTGTCACCAAATCAGgtactggcca ... atccttatagATTCGAGCTTTGGAGAAAAAGAAGAAGTCTGGAAAGTTTGCAAAGAAGGTC
EST: TTGGAGGCCCAACTTTATATGAGAATCCGCTCTATGTGTCACCAAATCAG ATTCGAGCTTTGGAGAAAAAGAAGAAGTCTGGAAAGTTTGCAAAGAAGGTC
genomic: TTGGAGGCCCAACTTTATATGAGAATCCGCTCTATGTGTCACCAAATCAGgtactggcca ... atccttatagATTCGAGCTTTGGAGAAAAAGAAGAAGTCTGGAAAGTTTGCAAAGAAGGTC
ccaagctttccactgacaatataactctatcgttattggttgctgatccttatagATTCGAGCTTTGGAGAAAAAGAAGAAGTCTGGAAAGTTTGCAAAGAAGGTCAAAGCAAAGACAAGGAGGAAAATGCACGAGATGTCCAATCCTCTGGAGC
tccttat CT-rich tract
acaatataa TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtactggccaatatattttccatctatatttataatttcccaagctttccactgacaatataactctatcgttattggttgctgatccttatagATTCGAGCTTTGGAGAAAAAGAAGAAGTCTGGAAAGTTTGCAAAGAAGGTCAAAGCAAAGACAAGGAGGAAAATGCACGAGATGTCCAATCCTCTGGAGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGCAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCAAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGATG