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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

...tactaatgcaaatgcagagcaatttgtttgtcaatgttaacttaatgtgttattaagtattttatagcctgaccaacgctcaaattttgtgcctttgcagGCTGTTTGCACCGAAGCTGGAATGTTTGCATTGAGGGAGCGGAGGGTACACGTGACTCAGGAGGATTTTGAGATGGCTGTGGCCAAGGTGATGAAAAAGG

Basic information

species Glycine max
transcript GLYMA08G24000.1
intron # 8
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA08G24000.1 (Glycine max), 3'ss of exon 8
lower sequence: GRMZM2G107362_T04 (Zea mays), 3'ss of exon 8
tactaatgcaaat-gcagagcaatt-tgtttgtcaatgttaacttaatgtgttattaagtattttatagcctgaccaacgctcaaattttgtgcctttgcagGCTGTTTGCACCGAAGCTGGAATGTTTGCATTGAGGGAGCGGAGGGTACACGTGACTCAGGAGGATTTTGAGATGGCTGTGGCCAAGGTGATGAAAAAGG
|   |||||  ||  |  |||| || || | || |  |||    ||   |  | ||  || ||| | |   |  ||     |    ||| |||    | ||||| || ||||| || ||||||||||||||  |  | ||| | ||||| ||||| || |||||||| || |||||||| ||||||||||||||||| || |
tttcaatgcttattaccaagcatttgtgatcgttatagttcctatagctttgtgttt-gtgtttcagactttttcctttcatttt-tttggtgttggttcagGCCGTCTGCACAGAGGCTGGAATGTTTGCTCTTCGTGAGAGAAGGGTGCACGTTACCCAGGAGGACTTCGAGATGGCAGTGGCCAAGGTGATGAAGAAAG

upper sequence: GLYMA08G24000.1 (Glycine max), 3'ss of exon 8
lower sequence: GRMZM2G137528_T01 (Zea mays), 3'ss of exon 8
---tactaatgcaaatgca--gagcaatttgtttgtcaa-tgttaacttaatgtgttattaagtattttatagcctgaccaacgctcaaattttgtgcctttgcagGCTGTTTGCACCGAAGCTGGAATGTTTGCATTGAGGGAGCGGAGGGTACACGTGACTCAGGAGGATTTTGAGATGGCTGTGGCCAAGGTGATGAAAAAGG
   |  |||  | | | ||       |  ||||||     | |    | ||| |  | || |   ||  |      |   |||  |    |||| || || | ||||| || || || || ||||||||||||||  |  | ||| | ||||| ||||| || |||||||| || |||||||| ||||||||||||||||| || |
gtttgttaaatccacttcatctgatgaactgtttgctgcctctcgtttcaatcttgtgttga---ttcgaagtaacgtttaacatttt--ttttttggctgttcagGCCGTCTGTACAGAGGCTGGAATGTTTGCTCTCCGTGAGAGAAGGGTGCACGTTACACAGGAGGACTTCGAGATGGCAGTGGCCAAGGTGATGAAGAAAG

upper sequence: GLYMA08G24000.1 (Glycine max), 3'ss of exon 8
lower sequence: AT5G20000.1 (Arabidopsis thaliana), 3'ss of exon 8
tactaatgcaaatgcagagcaatttgtttgtcaatgttaacttaatgtgttattaagtattttatagcctgaccaacgctcaaattttgtgcctttgcagGCTGTTTGCACCGAAGCTGGAATGTTTGCATTGAGGGAGCGGAGGGTACACGTGACTCAGGAGGATTTTGAGATGGCTGTGGCCAAGGTGATGAAAAAGG
                 |    ||| | ||||  || |    |  |||  | |  | | | |      ||  | || | |     ||  | |  |  |||||||| ||||| || || || ||||||||| |  | ||| |||| ||||| ||||||||||| || ||||||||||||||||| ||||| ||||| || |
---------------gtaagtgtttctctgtccctgcttctgtcttgttctctccaatctgtc----tctctctaatgtttttggttattacggt--cagGCTGTATGCACGGAGGCGGGCATGTTTGCACTTCGTGAGAGGAGAGTACATGTGACTCAGGAAGACTTTGAGATGGCTGTGGCGAAGGTAATGAAGAAAG

upper sequence: GLYMA08G24000.1 (Glycine max), 3'ss of exon 8
lower sequence: AT5G19990.1 (Arabidopsis thaliana), 3'ss of exon 8
tactaatgcaaatgcagagcaatttgtttgtcaatgttaacttaatgtgttattaagtattttatagcctgaccaacgctcaaattttgtgcctttgcagGCTGTTTGCACCGAAGCTGGAATGTTTGCATTGAGGGAGCGGAGGGTACACGTGACTCAGGAGGATTTTGAGATGGCTGTGGCCAAGGTGATGAAAAAGG
             | | ||   ||| | | ||  |  |    |  |||  | |  |  |||||     ||  |  | | |     ||  | |  |  |||||||| ||||| || || |||||||||||  || | ||| |||| ||||||||||| || || || ||||||||||| ||||||||||| ||||| || |
-------------gtaaagtgttttctatttctctacttctatcttgttctctcta-cattttgcc-tctctcttatgtttttggttaatacggt--cagGCTGTGTGCACGGAGGCGGGAATGTTTGCTCTGCGTGAGAGGAGAGTACACGTGACACAAGAAGACTTTGAGATGGCGGTGGCCAAGGTAATGAAGAAAG

upper sequence: GLYMA08G24000.1 (Glycine max), 3'ss of exon 8
lower sequence: Vv04s0008g04690.t01 (Vitis vinifera), 3'ss of exon 8
tactaatgca--aatgcagagcaatttgtttgtcaatgttaacttaatgtgttattaagtattttata-gcctgaccaacgctcaaattttgtgcctttgcagGCTGTTTGCACCGAAGCTGGAATGTTTGCATTGAGGGAGCGGAGGGTACACGTGACTCAGGAGGATTTTGAGATGGCTGTGGCCAAGGTGATGAAAAAGG
 |||||  |   | |    | ||  |    ||     | | |  |  | |||  |  |  ||     | | || || ||  ||   || |  |   ||||||||| || ||||| |||||||||||||||||  | |||||| |||| ||||| ||||| || || |||||||||||||| ||||| ||||||||||||||||
-actaagtccttattcttcatcatatcaagtgcggtcggttatctgttttgtcttctaacatcaagcatgtctaactaa-acttttatataat-tgtttgcagGCGGTATGCACAGAAGCTGGAATGTTTGCTCTAAGGGAGAGGAGAGTACATGTGACACAAGAAGATTTTGAGATGGCAGTGGCAAAGGTGATGAAAAAGG

upper sequence: GLYMA08G24000.1 (Glycine max), 3'ss of exon 8
lower sequence: Vv09s0002g05800.t01 (Vitis vinifera), 3'ss of exon 8
--tactaatgcaaatgcagagcaatttgtttgtcaatgttaacttaatgtgttattaagtattttatagcctgacc--aacgctcaaattttgtgcctttgcagGCTGTTTGCACCGAAGCTGGAATGTTTGCATTGAGGGAGCGGAGGGTACACGTGACTCAGGAGGATTTTGAGATGGCTGTGGCCAAGGTGATGAAAAAGG
   |||        | || ||   ||||  | | ||||  |||    |   |   ||  | |  ||   |  |     | |  |  || |||     ||||||||| || ||||| ||||| || |||||||| ||||||||| ||||||| ||||| || ||||| ||||| ||||||||||| ||||| |||||||| ||||
ctgactttcctgccttcataggtttttgaatat-aatggaaaccatttacttgcatagatctgatacctctcggattgagcatttgaacttt---tgtttgcagGCGGTATGCACAGAAGCAGGGATGTTTGCTTTGAGGGAGAGGAGGGTTCACGTAACACAGGAAGATTTCGAGATGGCTGTAGCCAAAGTGATGAAGAAGG

upper sequence: GLYMA08G24000.1 (Glycine max), 3'ss of exon 8
lower sequence: EDO96639 (Chlamydomonas reinhardtii), 3'ss of exon 8
----tactaatgcaaatgcagagcaatt---tgtttgtcaatgttaac-------ttaatgtgttattaagtattttatagcctgaccaacgctcaaattttgtgcctttgc--agGCTGTTTGCACCGAAGCTGGAATGTTTGCATTGAGGGAGCGGAGGGTACACGTGACTCAGGAGGATTTTGAGATGGCTGTGGCCAAGGTGATGAAAAAGG
      |     |  ||||  |    ||   |  |  | ||||| | |       |    |                | |  |  |||  | ||| |     | |||   ||  ||||    |||||||| || || ||||||||  || |||||||  | || |||||||| |||||||| ||||||||||| ||||||                
ctcacccccgcacccatgcccacttcttaaatactcatgaatgtaaccccccccctccccgccccccccccccacacacacacacacccgccctccacagCGGCGCCGAGGCCAAGGCCTGCTGCACCGAGGCGGGCATGTTTGCGCTGCGGGAGCGCCGCGTGCACGTGACGCAGGAGGACTTTGAGATGGCGGTGGCC----------------

upper sequence: GLYMA08G24000.1 (Glycine max), 3'ss of exon 8
lower sequence: PP1S7016_1V6.1 (Physcomitrella patens), 3'ss of exon 3
--------------------------------tactaatgcaaatgcagagcaatttgtttgtcaatgttaacttaatgtgttattaagtattttatagcctgaccaacgctcaaattttgtgcctttg--cagGCTGTTTGCACCGAAGCTGGAATGTTTGCATTGAGGGAGCGGAGGGTACACGTGACTCAGGAGGATTTTGAGATGGCTGTGGCCAAGGTGATGAAAAAGG
                                | ||  |    || |  || ||  || | |   | | |    || | ||||||| |  |||||      |     |  || |  |||| |  |||    |||||||| ||||| || ||||| ||||||||  |  | || ||| | ||||| ||||| || ||||| || |||||||||||||| ||||||||||| ||||
gtagctacaaacctacagtatctagggtttatttctggtagtgatacgaaggaagctgctag---aggcttttgtattatgttatttaaaattttggctgttcgtttatactaattttttattgcttcaatcagGCTGTATGCACAGAGGCTGGCATGTTTGCTCTACGTGAACGGCGTGTACATGTGACACAAGAGGACTTCGAGATGGCTGTGGCTAAGGTGATGAAGAAGG

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|254333838|gb|GR848756.1|GR848756
EST:     TGAAGAAGATTGCCGAGAAGATGAATGGAGCATCTGGTGCTGAACTTAAG                         GCTGTTTGCACCGAAGCTGGAATGTTTGCATTGAGGGAGCGGAGGGTACAC
genomic: TGAAGAAGATTGCCGAGAAGATGAATGGAGCATCTGGTGCTGAACTTAAGgtatatttca ... gcctttgcagGCTGTTTGCACCGAAGCTGGAATGTTTGCATTGAGGGAGCGGAGGGTACAC
EST: gi|254325634|gb|GR838515.1|GR838515
EST:     TGAAGAAGATTGCCGAGAAGATGAATGGAGCATCTGGTGCTGAACTTAAG                         GCTGTTTGCACCGAAGCTGGAATGTTTGCATTGAGGGAGCGGAGGGTACAC
genomic: TGAAGAAGATTGCCGAGAAGATGAATGGAGCATCTGGTGCTGAACTTAAGgtatatttca ... gcctttgcagGCTGTTTGCACCGAAGCTGGAATGTTTGCATTGAGGGAGCGGAGGGTACAC
EST: gi|151400412|gb|EV270226.1|EV270226
EST:     TGAAGAAGATTGCCGAGAAGATGAATGGAGCATCTGGTGCTGAACTTAAG                         GCTGTTTGCACCGAAGCTGGAATGTTTGCATTGAGGGAGCGGAGGGTACAC
genomic: TGAAGAAGATTGCCGAGAAGATGAATGGAGCATCTGGTGCTGAACTTAAGgtatatttca ... gcctttgcagGCTGTTTGCACCGAAGCTGGAATGTTTGCATTGAGGGAGCGGAGGGTACAC
EST: gi|214007288|gb|DB986224.1|DB986224
EST:     CGAGAAGATGAATGGAGCATCTGGTGCTGAACTTAAG                         GCTGTTTGCACCGAAGCTGGAATGTTTGCATTGAGGGAGCGGAGGGTACAC
genomic: CGAGAAGATGAATGGAGCATCTGGTGCTGAACTTAAGgtatatttca ... gcctttgcagGCTGTTTGCACCGAAGCTGGAATGTTTGCATTGAGGGAGCGGAGGGTACAC
EST: gi|16346794|gb|BI972389.1|BI972389
EST:     TGAAGAAGATTGCCGAGAAGATGAATGGAGCATCTGGTGCTGAACTTAAG                         GCTGTTTGCACCGAAGCTGGAATGTTTGCATTGAGGGAGCGGAGGGTACAC
genomic: TGAAGAAGATTGCCGAGAAGATGAATGGAGCATCTGGTGCTGAACTTAAGgtatatttca ... gcctttgcagGCTGTTTGCACCGAAGCTGGAATGTTTGCATTGAGGGAGCGGAGGGTACAC
EST: gi|16279574|gb|BI943506.1|BI943506
EST:     TGAAGAAGATTGCCGAGAAGATGAATGGAGCATCTGGTGCTGAACT-AAG                         GGTGGTTGCACCGAAGCTGGAATGTTTGCATTGAGGGAGCGGAGGGTACAC
genomic: TGAAGAAGATTGCCGAGAAGATGAATGGAGCATCTGGTGCTGAACTTAAGgtatatttca ... gcctttgcagGCTGTTTGCACCGAAGCTGGAATGTTTGCATTGAGGGAGCGGAGGGTACAC
EST: gi|209705801|gb|BW661469.1|BW661469
EST:     TGAAGAAGATTGCCGAGAAGATGAATGGAGCATCTGGTGCTGAACTTAAG                         GCTGTTTGCACCGAAGCTGGAATGTTTGCATTGAGGGAGCGGAGGGTACAC
genomic: TGAAGAAGATTGCCGAGAAGATGAATGGAGCATCTGGTGCTGAACTTAAGgtatatttca ... gcctttgcagGCTGTTTGCACCGAAGCTGGAATGTTTGCATTGAGGGAGCGGAGGGTACAC
EST: gi|9819982|gb|BE555495.1|BE555495
EST:     TGAAGAAGATTGCCGAGAAGATGAATGGAGCATCTGGTGCTGAACTTAAG                         GCTGTTTGCACCGAAGCTGGAATGTTTGCATTGAGGGAGCGGANGGTACAC
genomic: TGAAGAAGATTGCCGAGAAGATGAATGGAGCATCTGGTGCTGAACTTAAGgtatatttca ... gcctttgcagGCTGTTTGCACCGAAGCTGGAATGTTTGCATTGAGGGAGCGGAGGGTACAC
EST: gi|16282487|gb|BI945043.1|BI945043
EST:     TGAAGAAGATTGCCGAGAAGATGAATGGAGCATCTGGTGCTGAACTTAAG                         GCTGTTTGCACCGAAGCTGGAATGTTTGCATTGAGGGAGCGGAGGGTACAC
genomic: TGAAGAAGATTGCCGAGAAGATGAATGGAGCATCTGGTGCTGAACTTAAGgtatatttca ... gcctttgcagGCTGTTTGCACCGAAGCTGGAATGTTTGCATTGAGGGAGCGGAGGGTACAC
EST: gi|254349062|gb|GR860334.1|GR860334
EST:     TGAAGAAGATTGCCGAGAAGATGAATGGAGCATCTGGTGCTGAACTTAAG                         GCTGTTTGCACCGAAGCTGGAATGTTTGCATTGAGGGAGCGGAGGGTACAC
genomic: TGAAGAAGATTGCCGAGAAGATGAATGGAGCATCTGGTGCTGAACTTAAGgtatatttca ... gcctttgcagGCTGTTTGCACCGAAGCTGGAATGTTTGCATTGAGGGAGCGGAGGGTACAC
EST: gi|31306289|gb|CD391492.1|CD391492
EST:     TGAAGAAGATTGCCGAGAAGATGAATGGAGCATCTGGTGCTGAACTTAAG                         GCTGTTTGCACCGAAGCTGGAATGTTTGCATTGAGGGAGCGGAGGGTACAC
genomic: TGAAGAAGATTGCCGAGAAGATGAATGGAGCATCTGGTGCTGAACTTAAGgtatatttca ... gcctttgcagGCTGTTTGCACCGAAGCTGGAATGTTTGCATTGAGGGAGCGGAGGGTACAC
EST: gi|15589667|gb|BI674283.1|BI674283
EST:     TGAAGAAGATTGCCGAGAAGATGAATGGAGCATCTGGTGCTGAACTTAAG                         GCTGTTTGCACCGAAGCTGGAATGTTTGCATTGAGGGAGCGGAGGGTACAC
genomic: TGAAGAAGATTGCCGAGAAGATGAATGGAGCATCTGGTGCTGAACTTAAGgtatatttca ... gcctttgcagGCTGTTTGCACCGAAGCTGGAATGTTTGCATTGAGGGAGCGGAGGGTACAC
EST: gi|16282402|gb|BI944997.1|BI944997
EST:     TGAAGAAGATTGCCGAGAAGATGAATGGAGCATCTGGTGCTGAACTTAAG                         GCTGTTTGCACCGAAGCTGGAATGTTTGCATTGAGGGAGCGGAGGGTACAC
genomic: TGAAGAAGATTGCCGAGAAGATGAATGGAGCATCTGGTGCTGAACTTAAGgtatatttca ... gcctttgcagGCTGTTTGCACCGAAGCTGGAATGTTTGCATTGAGGGAGCGGAGGGTACAC
EST: gi|15661720|gb|BI699091.1|BI699091
EST:     TGAAGAAGATTGCCGAGAAGATGAATGGAGCATCTGGTGCTGAACTTAAG                         GCTGTTTGCACCGAAGCTGGA
genomic: TGAAGAAGATTGCCGAGAAGATGAATGGAGCATCTGGTGCTGAACTTAAGgtatatttca ... gcctttgcagGCTGTTTGCACCGAAGCTGGA
EST: gi|192298661|gb|FG990957.1|FG990957
EST:     TGAAGAAGATTGCCGAGAAGATGAATGGAGCATCTGGTGCTGAACTTAAG                         GCTGTTTGCACCGAAGCTGGAATGTTTGCATTGAGGGAGCGGAGGGTACAC
genomic: TGAAGAAGATTGCCGAGAAGATGAATGGAGCATCTGGTGCTGAACTTAAGgtatatttca ... gcctttgcagGCTGTTTGCACCGAAGCTGGAATGTTTGCATTGAGGGAGCGGAGGGTACAC
EST: gi|37997552|gb|CF809141.1|CF809141
EST:     TGAAGAAGATTGCCGAGAAGATGAATGGAGCATCTGGTGCTGAACTTAAG                         GCTGTTTGCACCGAAGCTGGAATGTTTGCATTGAGGGAGCGGAGGGTACAC
genomic: TGAAGAAGATTGCCGAGAAGATGAATGGAGCATCTGGTGCTGAACTTAAGgtatatttca ... gcctttgcagGCTGTTTGCACCGAAGCTGGAATGTTTGCATTGAGGGAGCGGAGGGTACAC
EST: gi|15589675|gb|BI674291.1|BI674291
EST:     TGAAGAAGATTGCCGAGAAGATGAATGGAGCATCTGGTGCTGAACTTAAG                         GCTGTTTGCACCGAAGCTGGAATGTTTGCATTGAGGGAGCGGAGGGTACAC
genomic: TGAAGAAGATTGCCGAGAAGATGAATGGAGCATCTGGTGCTGAACTTAAGgtatatttca ... gcctttgcagGCTGTTTGCACCGAAGCTGGAATGTTTGCATTGAGGGAGCGGAGGGTACAC
EST: gi|214007434|gb|DB986969.1|DB986969
EST:     TGAAGAAGATTGCCGAGAAGATGAATGGAGCATCTGGTGCTGAACTTAAG                         GCTGTTTGCACCGAAGCTGGAATGTTTGCATTGAGGGAGCGGAGGGTACAC
genomic: TGAAGAAGATTGCCGAGAAGATGAATGGAGCATCTGGTGCTGAACTTAAGgtatatttca ... gcctttgcagGCTGTTTGCACCGAAGCTGGAATGTTTGCATTGAGGGAGCGGAGGGTACAC
EST: gi|193458163|gb|FK421600.1|FK421600
EST:     TGAAGAAGATTGCCGAGAAGATGAATGGAGCATCTGGTGCTGAACTTAAG                         GCTGTTTGCACCGAAGCTGGAATGTTTGCATTGAGGGAGCGGAGGGTACAC
genomic: TGAAGAAGATTGCCGAGAAGATGAATGGAGCATCTGGTGCTGAACTTAAGgtatatttca ... gcctttgcagGCTGTTTGCACCGAAGCTGGAATGTTTGCATTGAGGGAGCGGAGGGTACAC
EST: gi|120534367|gb|EH262500.1|EH262500
EST:     TGAAGAAGATTGCCGAGAAGATGAATGGAGCATCTGGTGCTGAACTTAAG                         GCTGTTTGCACCGAAGCTGGAATGTTTGCATTGAGGGAGCGGAGGGTACAC
genomic: TGAAGAAGATTGCCGAGAAGATGAATGGAGCATCTGGTGCTGAACTTAAGgtatatttca ... gcctttgcagGCTGTTTGCACCGAAGCTGGAATGTTTGCATTGAGGGAGCGGAGGGTACAC
EST: gi|16996050|gb|BM085422.1|BM085422
EST:     TGAAGAAGATTGCCGAGAAGATGAATGGAGCATCTGGTGCTGAACTTAAG                         GCTGTTTGCACCGAAGCTGGAATGTTTGCATTGAGGGAGCGGAGGGTACAC
genomic: TGAAGAAGATTGCCGAGAAGATGAATGGAGCATCTGGTGCTGAACTTAAGgtatatttca ... gcctttgcagGCTGTTTGCACCGAAGCTGGAATGTTTGCATTGAGGGAGCGGAGGGTACAC
EST: gi|120494201|gb|EH222368.1|EH222368
EST:     TGAAGAAGATTGCCGAGAAGATGAATGGAGCATCTGGTGCTGAACTTAAG                         GCTGTTTGCACCGAAGCTGGAATGTTTGCATTGAGGGAGCGGAGGGTACAC
genomic: TGAAGAAGATTGCCGAGAAGATGAATGGAGCATCTGGTGCTGAACTTAAGgtatatttca ... gcctttgcagGCTGTTTGCACCGAAGCTGGAATGTTTGCATTGAGGGAGCGGAGGGTACAC
EST: gi|213604425|gb|DB978241.1|DB978241
EST:     TGAAGAAGATTGCCGAGAAGATGAATGGAGCATCTGGTGCTGAACTTAAG                         GCTGTTTGCACCGAAGCTGGAATGTTTGCATTGAGGGAGCGGAGGGTACAC
genomic: TGAAGAAGATTGCCGAGAAGATGAATGGAGCATCTGGTGCTGAACTTAAGgtatatttca ... gcctttgcagGCTGTTTGCACCGAAGCTGGAATGTTTGCATTGAGGGAGCGGAGGGTACAC
EST: gi|18690675|gb|BM519523.1|BM519523
EST:     TGAAGAAGATTGCCGAGAAGATGAATGGAGCATCTGGTGCTGAACTTAAG                         GCTGTTTGCACCGAAGCTGGAATGTTTGCATTGAGGGAGCGGAGGGTACAC
genomic: TGAAGAAGATTGCCGAGAAGATGAATGGAGCATCTGGTGCTGAACTTAAGgtatatttca ... gcctttgcagGCTGTTTGCACCGAAGCTGGAATGTTTGCATTGAGGGAGCGGAGGGTACAC
EST: gi|209706925|gb|BW661510.1|BW661510
EST:     TGAAGAAGATTGCCGAGAAGATGAATGGAGCATCTGGTGCTGAACTTAAG                         GCTGTTTGCACCGAAGCTGGAATGTTTGCATTGAGGGAGCGGAGGGTACAC
genomic: TGAAGAAGATTGCCGAGAAGATGAATGGAGCATCTGGTGCTGAACTTAAGgtatatttca ... gcctttgcagGCTGTTTGCACCGAAGCTGGAATGTTTGCATTGAGGGAGCGGAGGGTACAC


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tgtgttattaagtattttatagcctgaccaacgctcaaattttgtgcctttgcagGCTGTTTGCACCGAAGCTGGAATGTTTGCATTGAGGGAGCGGAGGGTACACGTGACTCAGGAGGATTTTGAGATGGCTGTGGCCAAGGTGATGAAAAAGG
                     gcctgac  putative branch site (score: 3)
                                            tgccttt  putative PPT
     tattaagtattttata  TA-rich tract
















Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
tactaatgcaaatgcagagcaatttgtttgtcaatgttaacttaatgtgttattaagtattttatagcctgaccaacgctcaaattttgtgcctttgcagGCTGTTTGCACCGAAGCTGGAATGTTTGCATTGAGGGAGCGGAGGGTACACGTGACTCAGGAGGATTTTGAGATGGCTGTGGCCAAGGTGATGAAAAAGG

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  GGAGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGGAT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  GAGATG
- - aatgcaa
- - - - - - tgcagag
- - - - - - - - - - - - tgtttgt
- - - - - - - - - - - - - - - -caatgtt
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -agcctga
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - ccaacgc