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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtgggtgcctcatgtcttttgcagccatttctttttctgtcccttaatatgtaatgtgatctaatgctatgtttctttatgcatttgcttcagCCACAATCTCTTCCTCCACTCAGCGCTGGTGCTTTCCAGGAAAATACCGCGATCAGTTCGTGGAATCAAA

Basic information

species Glycine max
transcript GLYMA08G23320.1
intron # 8
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA08G23320.1 (Glycine max), 3'ss of exon 8
lower sequence: Vv09s0070g00210.t01 (Vitis vinifera), 3'ss of exon 8
gtgggtgcctcatgtcttttgcagccatttctttttctgtcccttaatatgtaatgtgatctaatgctatgtt--tctttatgcatttgcttcagCCACAATCTCTTCCTCCACTCAGCGCTGGTGCTTTCCAGGAAAATACCGCGATCAGTTCGTGGAATCAAA
||  ||  || |||||  |   |     || ||||||  | | ||  |    ||  |  |||  | || ||||     | ||||| ||||| ||| |||||||||||||| ||||||||  |||||||||||||||||||||| ||||| |||||||| ||||||
gtaagtttcttatgtccatgagaagtgcttatttttccatgcatttttcaaaaaaatattctctt-ctttgttgactctcatgcacttgctgcagGCACAATCTCTTCCTTCACTCAGCATTGGTGCTTTCCAGGAAAATACCACGATCTGTTCGTGGCATCAAA


















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

gtcccttaatatgtaatgtgatctaatgctatgtttctttatgcatttgcttcagCCACAATCTCTTCCTCCACTCAGCGCTGGTGCTTTCCAGGAAAATACCGCGATCAGTTCGTGGAATCAAA
                    atctaat  putative branch site (score: 3)
                                             tttgcttc  putative PPT
     ttaatatgtaatgt  TA-rich tract