1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' |
...ggggaaggattagctgtcacttgtgaaccttttaagaacatcttgagttctcttcattattcctttttcctgtttaaaaaaatacatattttttgaatagGTTCTGCAAGCCGATTATGACAACACAGAAGCCAACAAAGGCAGTTACTCCAGCAGGACCAGCAACCCCATCTTCTCAGAGTGATGAGCAACAGCAACCC
species | Glycine max |
transcript | GLYMA08G22100.1 |
intron # | 8 |
splice site | 3' |
intron type | U2 |
EST: CCTGTACTCTTGTCAGCTGAAATGAGAAAGAAAGCTGAAGATGTCGATAG GTTCTGCAAGCCGATTATGACAACACAGAAGCCAACAAAGGCAGTTACTCCEST: gi|58023875|gb|CX710616.1|CX710616
genomic: CCTGTACTCTTGTCAGCTGAAATGAGAAAGAAAGCTGAAGATGTCGATAGgtatttgttt ... ttttgaatagGTTCTGCAAGCCGATTATGACAACACAGAAGCCAACAAAGGCAGTTACTCC
EST: CCTGTACTCTTGTCAGCTGAAATGAGAAAGAAAGCTGAAGATGTCGATAG GTTCTGCAAGCCGATTATGACAACACAGAAGCCAACAAAGGCAGTTACTCCEST: gi|21888224|gb|BQ741428.1|BQ741428
genomic: CCTGTACTCTTGTCAGCTGAAATGAGAAAGAAAGCTGAAGATGTCGATAGgtatttgttt ... ttttgaatagGTTCTGCAAGCCGATTATGACAACACAGAAGCCAACAAAGGCAGTTACTCC
EST: CCTGTACTCTTGTCAGCTGAAATGAGAAAGAAAGCTGAAGATGTCGATAG GTTCTGCAAGCCGATTATGACAACACAGAAGCCAACAAAGGCAGTTACTCCEST: gi|7234188|gb|AW569527.1|AW569527
genomic: CCTGTACTCTTGTCAGCTGAAATGAGAAAGAAAGCTGAAGATGTCGATAGgtatttgttt ... ttttgaatagGTTCTGCAAGCCGATTATGACAACACAGAAGCCAACAAAGGCAGTTACTCC
EST: CCTGTACTCTTGTCAGCTGAAATGAGAAAGAAAGCTGAAGATGTCGATAG GTTCTGCAAGCCGATTATGACAACACAGAAGCCAACAAAGGCAGTTACTCCEST: gi|23730679|gb|BU763435.1|BU763435
genomic: CCTGTACTCTTGTCAGCTGAAATGAGAAAGAAAGCTGAAGATGTCGATAGgtatttgttt ... ttttgaatagGTTCTGCAAGCCGATTATGACAACACAGAAGCCAACAAAGGCAGTTACTCC
EST: CCTGTACTCTTGTCAGCTGAAATGAGAAAGAAAGCTGAAGATGTCGATAG GTTCTGCAAGCCGATTATGACAACACAGAAGCCAACAAAGGCAGTTACTCCEST: gi|151409143|gb|EV278951.1|EV278951
genomic: CCTGTACTCTTGTCAGCTGAAATGAGAAAGAAAGCTGAAGATGTCGATAGgtatttgttt ... ttttgaatagGTTCTGCAAGCCGATTATGACAACACAGAAGCCAACAAAGGCAGTTACTCC
EST: CCTGTACTCTTGTCAGCTGAAATGAGAAAGAAAGCTGAAGATGTCGATAG GTTCTGCAAGCCGATTATGACAACACAGAAGCCAACAAAGGCAGTTACTCCEST: gi|51335761|gb|CO979627.1|CO979627
genomic: CCTGTACTCTTGTCAGCTGAAATGAGAAAGAAAGCTGAAGATGTCGATAGgtatttgttt ... ttttgaatagGTTCTGCAAGCCGATTATGACAACACAGAAGCCAACAAAGGCAGTTACTCC
EST: CCTGTACTCTTGTCAGCTGAAATGAGAAAGAAAGCTGAAGATGTCGATAG GTTCTGCAAGCCGATTATGACAACACAGAAGCCAACAAAGGCAGTTACTCC
genomic: CCTGTACTCTTGTCAGCTGAAATGAGAAAGAAAGCTGAAGATGTCGATAGgtatttgttt ... ttttgaatagGTTCTGCAAGCCGATTATGACAACACAGAAGCCAACAAAGGCAGTTACTCC
agttctcttcattattcctttttcctgtttaaaaaaatacatattttttgaatagGTTCTGCAAGCCGATTATGACAACACAGAAGCCAACAAAGGCAGTTACTCCAGCAGGACCAGCAACCCCATCTTCTCAGAGTGATGAGCAACAGCAACCC
tatttttt CT-rich tract
tttttcctgtttaaaa TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| ggggaaggattagctgtcacttgtgaaccttttaagaacatcttgagttctcttcattattcctttttcctgtttaaaaaaatacatattttttgaatagGTTCTGCAAGCCGATTATGACAACACAGAAGCCAACAAAGGCAGTTACTCCAGCAGGACCAGCAACCCCATCTTCTCAGAGTGATGAGCAACAGCAACCC
-gggaagg
- - - - - - -ctgtcac
- - - - - - - - - - -tgtgaac
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -aaaaaaa