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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtatttataattgaaatcggattatgtagaaaatgttgatacaactatttatgcagttttttgtattgatattaacctgtatggaaaatattttcagGGGCACAGTCCGCTATGCTAGTGTGCATGCACATTTAGGGAGAACTGCAAGCAGGAGGGATGACTTGGAATCTCTTGCATATACACTGATTTTTCTTCTT

Basic information

species Glycine max
transcript GLYMA08G21570.1
intron # 8
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA08G21570.1 (Glycine max), 3'ss of exon 8
lower sequence: LOC_Os01g54100.2 (Oryza sativa), 3'ss of exon 7
gtatttataattgaaatcggatta-tgtagaaaatgttgatacaactat--ttatgcagttttttg------tattgatattaacctgtatggaaaatattttcagGGGCACAGTCCGCTATGCTAGTGTGCATGCACATTTAGGGAGAACTGCAAGCAGGAGGGATGACTTGGAATCTCTTGCATATACACTGATTTTTCTTCTT
        ||| ||   |  |||  |||    ||||   |  ||    |  |  || ||  || |        | | |   |  | ||  |         ||||||||| ||||| |||||||||||||| ||||||||| |||||||||  |  ||| | |||||||| || |||||||| || || |||||  |||||||||| 
------gaaatagagccctaatttctgtcttgaatgccaactcattcttcatgttgtaggcttatagcaaatcagtaactctgccttgcttttgctgctatttcagGGGGACAGTTCGCTATGCTAGTGTTCATGCACATCTAGGGAGAATCGGTAGCCGAAGGGATGATTTAGAATCTCTAGCTTACACACTAGTTTTTCTTCTA

upper sequence: GLYMA08G21570.1 (Glycine max), 3'ss of exon 8
lower sequence: LOC_Os05g11140.1 (Oryza sativa), 3'ss of exon 8
gtatttataattgaaatcggattatgtagaaaatgttgatacaactatttatgcagttttttgtattgatattaacctg--------tatggaaaatattttcagGGGCACAGTCCGCTATGCTAGTGTGCATGCACATTTAGGGAGAACTGCAAGCAGGAGGGATGACTTGGAATCTCTTGCATATACACTGATTTTTCTTCTT
   ||| | |  || ||   | | | | |||||    |    ||  |    |  | ||| |||| ||  || ||| |||        ||  ||  |  |    ||||| || || |||||||||||||||||||| || ||||| ||||||| |||||| || |||||  | ||||| ||||| ||||||||  |||||||| | 
--gtttgtgagggagat---actttattgaaaactaagtcctaa--agccctcgattttcttgtgttactaataaactgacttgtcatactgattacctgaaaagGGGAACTGTTCGCTATGCTAGTGTGCATGCTCACTTAGGAAGAACTGGAAGCAGAAGAGATGATCTTGAATCCCTTGCCTATACACTTGTTTTTCTTTTA

upper sequence: GLYMA08G21570.1 (Glycine max), 3'ss of exon 8
lower sequence: LOC_Os01g10150.2 (Oryza sativa), 3'ss of exon 8
gtatttataattgaaatcggattatgtagaaaatgttgatacaactatttatgcagttttttgtattgata---ttaacctgtatggaaaatatttt---cagGGGCACAGTCCGCTATGCTAGTGTGCATGCACATTTAGGGAGAACTGCAAGCAGGAGGGATGACTTGGAATCTCTTGCATATACACTGATTTTTCTTCTT
                |  || ||   ||   ||   ||| |   |  || ||||  ||  | |||||||    |   ||||| ||     || | |   |||||| || || || ||||||||||||||||| || || || ||||||| | ||||||| |||||| | ||||| |||||||| ||||| ||||| ||||| 
---------------gtttgaatagaaagtttattacgatgcctatcattttgcacattactttattgatgcgctcttcctgtttgtctgctactgtaaacagGGGTACTGTTCGTTATGCTAGTGTGCATGCCCACTTGGGAAGAACTGGATGCAGGAGAGATGACCTTGAATCCCTTGCATACACACTTATTTTCCTTCTC

upper sequence: GLYMA08G21570.1 (Glycine max), 3'ss of exon 8
lower sequence: GRMZM2G095634_T01 (Zea mays), 3'ss of exon 1
------------------------------------------------------------------------------------gtatttataattgaaatcggattatgtagaaaa--tgttgatacaactatttatgcagttttttgtattgatattaacctgtatggaaaatatt-----ttcagGGGCACAGTCCGCTATGCTAGTGTGCATGCACATTTAGGGAGAACTGCAAGCAGGAGGGATGACTTGGAATCTCTTGCATATACACTGATTTTTCTTCTT
                                                                                      | |    | | ||   |   |   ||       | | | |  | | | | | | || |  | || ||  | |||   |  |  |  | |  |     |||||||| ||| | |||||||||||||| ||||||||| | |||||||| |  |||||||||||||| || |||||||| |||||||||||  | |||||||| 
gtatgcatggtagtagccattctttaactggacatggaatcagtctcttagtctctgttgagatggtacactaaacatattgtcacagtagctagtaaagctgtggtgcttatgcttcttatagttgaatcaaatgaaggagatactagtcttactgttatgatacactgttactgctgctgtttcagGGGAACATTTCGCTATGCTAGTGTTCATGCACATCTTGGGAGAACAGGTAGCAGGAGGGATGATTTAGAATCTCTAGCATATACACTAGTCTTTCTTCTA

upper sequence: GLYMA08G21570.1 (Glycine max), 3'ss of exon 8
lower sequence: GRMZM2G116151_T03 (Zea mays), 3'ss of exon 8
gtatttataattgaaat--cggattatgtagaaaatgttgatacaactatttatgcagttttttgtattgatattaacctgtatggaaaatatttt-------cagGGGCACAGTCCGCTATGCTAGTGTGCATGCACATTTAGGGAGAACTGCAAGCAGGAGGGATGACTTGGAATCTCTTGCATATACACTGATTTTTCTTCTT
   |||  ||| |||||     | || ||   |  |    |  |   ||||    |    || | |  | | |||       ||  |  |   |||       ||| || || || || |||||||| |||||||| ||||| |||||||||| |||||||||||||||| | ||||||||||| || |||||  | |||||||| 
--gtttgcaatagaaatacttcactaggttttatcttccaaggct-ttattctcccctacttctatgcttacattttttgtcatacatcactgtttaatggaacagAGGAACTGTTCGGTATGCTAGCGTGCATGCTCATTTGGGGAGAACTGGAAGCAGGAGGGATGACCTTGAATCTCTTGCCTACACACTTGTATTTCTTCTG

upper sequence: GLYMA08G21570.1 (Glycine max), 3'ss of exon 8
lower sequence: GRMZM2G158177_T01 (Zea mays), 3'ss of exon 1
gtatttataattgaaatcggattatgtagaaaatgttgatacaactatttatgcagtttt-ttgtattgatattaac--ctgtatggaaaatattttcagGGGCACAGTCCGCTATGCTAGTGTGCATGCACATTTAGGGAGAACTGCAAGCAGGAGGGATGACTTGGAATCTCTTGCATATACACTGATTTTTCTTCTT
          ||    | ||| |||       ||||       |||| | |     |||  ||| | |  | || ||   |||||       ||   |||||| || || |||||||||||||||||||| || || || |||||||  || ||||| |||||  | ||||| |||||||| || || ||||||||||| 
---------gttcgtttgggaatattagtttgatgt--gctttactactcacattatttcattggaatacttttgacatttgtatttgcttcataaacagGGGAACTGTTCGCTATGCTAGTGTGCATGCTCACTTGGGAAGAACTGGGAGTAGGAGAGATGATCTTGAATCCCTTGCATACACGCTTATTTTTCTTCTA

upper sequence: GLYMA08G21570.1 (Glycine max), 3'ss of exon 8
lower sequence: PP1S131_16V6.1 (Physcomitrella patens), 3'ss of exon 8
---------------------------gtatttataattgaaatcg-gattatgtagaaaatgttgatacaactatttatgcagttttttgtattgatattaacctgtatggaaaatattttcagGGGCACAGTCCGCTATGCTAGTGTGCATGCACATTTAGGGAGAACTGCAAGCAGGAGGGATGACTTGGAATCTCTTGCATATACACTGATTTTTCTTCTT
                           ||| ||   |||    |   |  | | | |    | | |     ||| |||   |  |    | ||||   |||    ||||       ||  | ||| || || || |||||||| ||||||||||||||||| || || ||||  || |||||||| ||||||||||| || || || ||  || | || ||||| 
gtgaggttcttccccctgtcctgatctgtagttgccattcctgttttggctgttttggcggt-tgggagtgactgttttgcccctgagctatattttgattc-tgtgtaatttccgtacatgcagTGGAACTGTTCGCTATGCAAGTGTGCATGCACATTTGGGAAGGACTGGGAGTAGGAGGGACGACTTGGAATCACTGGCTTACACTTTGGTATTCCTTCTG


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

aactatttatgcagttttttgtattgatattaacctgtatggaaaatattttcagGGGCACAGTCCGCTATGCTAGTGTGCATGCACATTTAGGGAGAACTGCAAGCAGGAGGGATGACTTGGAATCTCTTGCATATACACTGATTTTTCTTCTT
                           tattaac  putative branch site (score: 1)
                                              tattttc  putative PPT
            agttttttgtattgat  TA-rich tract