1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' |
...tgctgaaaataagtgattacttcttcatataagctaaaccataatagttgctgcttaatatgttatgctgaggtttacacattcaaatttgtggatgtagAGCCCTGATTTTGTGCCAAAAACTGTTGATATAGCAGCCAAAGAACTAATAGCAATTGCTTCCCCTGGACAAG
species | Glycine max |
transcript | GLYMA08G21380.1 |
intron # | 8 |
splice site | 3' |
intron type | U2 |
EST: TCAACAGTATCTTCAATAATACAGGACTGTTTGGCATTTATGCAAGCACT AGCCCTGATTTTGTGCCAAAAACTGTTGATATAGCAGCCAAAGAACTAATAEST: gi|13562687|gb|BG550907.1|BG550907
genomic: TCAACAGTATCTTCAATAATACAGGACTGTTTGGCATTTATGCAAGCACTgtaagcaaac ... gtggatgtagAGCCCTGATTTTGTGCCAAAAACTGTTGATATAGCAGCCAAAGAACTAATA
EST: TCAACAGTATCTTCAATAATACAGGACTGTTAGAAATTTATGCAAGCACT AGCCCTGATTTTGTGCCAAAAACTGTTGATATAGCAGCCAAAGAACTAATAEST: gi|18732951|gb|BM527341.1|BM527341
genomic: TCAACAGTATCTTCAATAATACAGGACTGTTTGGCATTTATGCAAGCACTgtaagcaaac ... gtggatgtagAGCCCTGATTTTGTGCCAAAAACTGTTGATATAGCAGCCAAAGAACTAATA
EST: TCAACAGTATCTTCAATAATACAGGACTGTTTGGCATTTATGCAAGCACT AGCCCTGATTTTGTGCCAAAAACTGTTGATATAGCAGCCAAAGAACTAATAEST: gi|38192388|gb|CF921594.1|CF921594
genomic: TCAACAGTATCTTCAATAATACAGGACTGTTTGGCATTTATGCAAGCACTgtaagcaaac ... gtggatgtagAGCCCTGATTTTGTGCCAAAAACTGTTGATATAGCAGCCAAAGAACTAATA
EST: TCAACAGTATCTTCAATAATACAGGACTGTTTGGCATTTATGCAAGCACT AGCCCTGATTTTGTGCCAAAAACTGTTGATATAGCAGCCAAAGAACTAATAEST: gi|38193674|gb|CF922880.1|CF922880
genomic: TCAACAGTATCTTCAATAATACAGGACTGTTTGGCATTTATGCAAGCACTgtaagcaaac ... gtggatgtagAGCCCTGATTTTGTGCCAAAAACTGTTGATATAGCAGCCAAAGAACTAATA
EST: TCAACAGTATCTTCAATAATACAGGACTGTTTGGCATTTATGCAAGCACT AGCCCTGATTTTGTGCCAAAAACTGTTGATATAGCAGCCAAAGAACTAATAEST: gi|10233365|gb|BE802253.1|BE802253
genomic: TCAACAGTATCTTCAATAATACAGGACTGTTTGGCATTTATGCAAGCACTgtaagcaaac ... gtggatgtagAGCCCTGATTTTGTGCCAAAAACTGTTGATATAGCAGCCAAAGAACTAATA
EST: TCAACAGTATCTTCAATAATACAGGACTGTTTGGCATTTATGCAAGCACT AGCCCTGATTTTGTGCCAAAAACTGTTGATATAGCAGCCAAAGAACTAATAEST: gi|8282640|gb|BE020201.1|BE020201
genomic: TCAACAGTATCTTCAATAATACAGGACTGTTTGGCATTTATGCAAGCACTgtaagcaaac ... gtggatgtagAGCCCTGATTTTGTGCCAAAAACTGTTGATATAGCAGCCAAAGAACTAATA
EST: TCAACAGTATCTTCAATAATACAAGACTGTTTGGCATTTATGCAAGCACT AGCCCTGATTTTGTGCCAAAAACTGTTGATATAGCA
genomic: TCAACAGTATCTTCAATAATACAGGACTGTTTGGCATTTATGCAAGCACTgtaagcaaac ... gtggatgtagAGCCCTGATTTTGTGCCAAAAACTGTTGATATAGCA
agttgctgcttaatatgttatgctgaggtttacacattcaaatttgtggatgtagAGCCCTGATTTTGTGCCAAAAACTGTTGATATAGCAGCCAAAGAACTAATAGCAATTGCTTCCCCTGGACAAG
gcttaat putative branch site (score: 4)
ttaatatgttat TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| tgctgaaaataagtgattacttcttcatataagctaaaccataatagttgctgcttaatatgttatgctgaggtttacacattcaaatttgtggatgtagAGCCCTGATTTTGTGCCAAAAACTGTTGATATAGCAGCCAAAGAACTAATAGCAATTGCTTCCCCTGGACAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAAGAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAC
tgctgaa
- - - - - - - - - -cttcttc
- - - - - - - - - - - - - - - - -ctaaacc
- - - - - - - - - - - - - - - - - - - - - - - -ttgctgc
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - gctgagg
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - acattca