Sequence
atgc intronic sequence ATGC exonic sequencegtatgcaatatttcttctttctttaggtaaattatgtctttgaatttgctgtgcattctttggaattattacgaacaaaaaaactcccaaaaaaaaatgtatccagTGCAGAAATCAGAGTACAATTCAGACACGTCCCAGGTAACTTGTACAAGAGGAATTTTGGAACTGATCTGGACAAAGCTACAAATGAGCTTGTGCTTCGT
Basic information
species | Glycine max |
transcript | GLYMA08G21270.1 |
intron # | 8 |
splice site | 3' |
intron type | U2 |
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: GLYMA08G21270.1 (Glycine max), 3'ss of exon 8
lower sequence: Vv12s0057g01030.t01 (Vitis vinifera), 3'ss of exon 8
gtatgcaatatttcttctttctttaggtaaattatgtctttgaatttgctgtgcattctttggaattattacgaacaaaaaaactcccaaaaaaaaatgtatccagTGCAGAAATCAGAGTACAATTCAGACACGTCCCAGGTAACTTGTACAAGAGGAATTTTGGAACTGATCTGGACAAAGCTACAAATGAGCTTGTGCTTCGT
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----------------------gtaggcaaatcattctttttcttctcatatatat-catcacatctcttctga---taaattttcttgctattaaat---tccagAGCAGAAGTTAGAGTGCAGTTCAGACATGTCCCTGGGAACTTGTACAAACAGAAGTTTGGAACTGATCTGGACAAGGCCACCAACGAGCTGGTGCTTCGC
upper sequence: GLYMA08G21270.1 (Glycine max), 3'ss of exon 8
lower sequence: Vv12s0057g00940.t01 (Vitis vinifera), 3'ss of exon 8
-----------gtatgcaatatttcttctttctttaggtaaatt-atgtctttgaatttg-ctgtgcattctttggaattatta---------cgaacaaaaaaactcccaaaaaaaaatgtatccagTGCAGAAATCAGAGTACAATTCAGACACGTCCCAGGTAACTTGTACAAGAGGAATTTTGGAACTGATCTGGACAAAGCTACAAATGAGCTTGTGCTTCGT
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gtgggcaaaccgttatcatcatcttcttcttccttatacaaattcatttttttagtctcgtccttgcattctgtgggaatttgaacagtggaatgaccgaaaatatttttgcaatgaaa---attcagAGCAGAGATCAGAGTGCAGTTCAGACATGTCCCAGGTAACTTGTACAAGCGGAACTTTGGGACTGATTTAGACAAGGCTACAAATGAGCTTGTGCTTCGCMapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|17401984|gb|BM178766.1|BM178766EST: GATGGGGTTCCTTTTCTTATGAAAGCTGGCAAGGCTCTCCATACTAAACG TGCAGAAATCAGAGTACAATTCAGACACGTCCCAGGTAACTTGTACAAGAG
genomic: GATGGGGTTCCTTTTCTTATGAAAGCTGGCAAGGCTCTCCATACTAAACGgtatgcaata ... atgtatccagTGCAGAAATCAGAGTACAATTCAGACACGTCCCAGGTAACTTGTACAAGAG
atgc intronic sequence ATGC exonic sequenceIntronic sequence truncated to 55 bases.tgcattctttggaattattacgaacaaaaaaactcccaaaaaaaaatgtatccagTGCAGAAATCAGAGTACAATTCAGACACGTCCCAGGTAACTTGTACAAGAGGAATTTTGGAACTGATCTGGACAAAGCTACAAATGAGCTTGTGCTTCGT
aaaaaaaaatgtat TA-rich tract
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
gtatgcaatatttcttctttctttaggtaaattatgtctttgaatttgctgtgcattctttggaattattacgaacaaaaaaactcccaaaaaaaaatgtatccagTGCAGAAATCAGAGTACAATTCAGACACGTCCCAGGTAACTTGTACAAGAGGAATTTTGGAACTGATCTGGACAAAGCTACAAATGAGCTTGTGCTTCGT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGCTT